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PIG-M Phosphatidylinositol glycan anchor biosynthesis class M [ Bombyx mori (domestic silkworm) ]

Gene ID: 101737047, updated on 16-May-2024

Summary

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Gene symbol
PIG-M
Gene description
Phosphatidylinositol glycan anchor biosynthesis class M
Gene type
protein coding
RefSeq status
MODEL
Organism
Bombyx mori
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx
Orthologs
fruit fly all
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Genomic context

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See PIG-M in Genome Data Viewer
Location:
chromosome: 24
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_01 current ASM3026992v2 (GCF_030269925.1) 24 NC_085130.1 (5885114..5898853)
103 previous assembly Bmori_2016v1.0 (GCF_014905235.1) 24 NC_051381.1 (5623411..5636834)

Chromosome 24 - NC_085130.1Genomic Context describing neighboring genes Neighboring gene porphobilinogen deaminase-like protein l(3)02640 Neighboring gene mitochondrial import receptor subunit TOM20 homolog Neighboring gene vacuolar protein sorting 26 Neighboring gene translocase of inner membrane 10 Neighboring gene uncharacterized LOC134201240 Neighboring gene NADH-ubiquinone oxidoreductase subunit B14.7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large scale full-length cDNA sequencing reveals a unique genomic landscape in a lepidopteran model insect, Bombyx mori. Suetsugu Y, et al. G3 (Bethesda), 2013 Sep 4. PMID 23821615, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glycolipid mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of glycosylphosphatidylinositol-mannosyltransferase I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GPI mannosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030269925.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3026992v2 Primary Assembly

Genomic

  1. NC_085130.1 Reference ASM3026992v2 Primary Assembly

    Range
    5885114..5898853
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004923060.5 → XP_004923117.1  GPI mannosyltransferase 1

    UniProtKB/TrEMBL
    A0A8R2AK09
    Conserved Domains (1) summary
    cl21590
    Location:22 → 411
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase
Nucleotide Protein
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