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cldn10 claudin 10 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 101733407, updated on 4-Nov-2024

Summary

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Official Symbol
cldn10provided by Xenbase
Official Full Name
claudin 10provided by Xenbase
Primary source
Xenbase:XB-GENE-940691
See related
Ensembl:ENSXETG00000035018 AllianceGenome:Xenbase:XB-GENE-940691
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
claudin-10
Summary
Predicted to enable structural molecule activity. Predicted to be located in bicellular tight junction and plasma membrane. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See cldn10 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (122346997..122377105, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (118952746..118964430, complement)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene heparan sulfate 6-O-sulfotransferase 3 Neighboring gene UDP-glucose glycoprotein glucosyltransferase 2 Neighboring gene DnaJ heat shock protein family (Hsp40) member C3 Neighboring gene DAZ interacting zinc finger protein 1 Neighboring gene ATP binding cassette subfamily C member 4 Neighboring gene SRY-box 21

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in bicellular tight junction IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
claudin-10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    122346997..122377105 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031897064.1 → XP_031752924.1  claudin-10 isoform X2

    UniProtKB/TrEMBL
    A0A8J1J4W7
    Conserved Domains (1) summary
    cl21598
    Location:1 → 169
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family

  2. XM_004912354.4 → XP_004912411.2  claudin-10 isoform X1

    UniProtKB/TrEMBL
    A0A6I8RV10
    Related
    ENSXETP00000085070.2, ENSXETT00000076942.2
    Conserved Domains (1) summary
    cl21598
    Location:3 → 177
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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