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Tspan3 tetraspanin 3 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101723367, updated on 8-Mar-2024

Summary

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Gene symbol
Tspan3
Gene description
tetraspanin 3
Locus tag
GW7_20265
See related
Ensembl:ENSHGLG00000001520
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
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Genomic context

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See Tspan3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624894.1 (1340974..1363571)

NW_004624894.1Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase subunit NDUFA4 pseudogene Neighboring gene RNA-binding protein 3 pseudogene Neighboring gene proline-serine-threonine phosphatase interacting protein 1 Neighboring gene protein Simiate pseudogene Neighboring gene reticulocalbin 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004624894 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing reveals insights into physiology and longevity of the naked mole rat. Kim EB, et al. Nature, 2011 Oct 12. PMID 21993625, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in protein localization to plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein maturation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of vascular endothelial growth factor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tetraspanin-3
Names
Tetraspanin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624894.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    1340974..1363571
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004872065.3 → XP_004872122.1  tetraspanin-3

    See identical proteins and their annotated locations for XP_004872122.1

    UniProtKB/TrEMBL
    G5AL20
    Related
    ENSHGLP00000001998.1, ENSHGLT00000002045.1
    Conserved Domains (2) summary
    cd03163
    Location:104 → 210
    TM4SF8_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF8_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    pfam00335
    Location:10 → 237
    Tetraspannin; Tetraspanin family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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