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Atf6b activating transcription factor 6 beta [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101715793, updated on 8-Mar-2024

Summary

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Gene symbol
Atf6b
Gene description
activating transcription factor 6 beta
Locus tag
GW7_04808
See related
Ensembl:ENSHGLG00000016687
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
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Genomic context

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See Atf6b in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624754.1 (24185203..24194351)

NW_004624754.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110349632 Neighboring gene proline rich transmembrane protein 1 Neighboring gene FKBP prolyl isomerase like Neighboring gene tenascin XB Neighboring gene steroid 21-hydroxylase Neighboring gene complement C4-A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004624754 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing reveals insights into physiology and longevity of the naked mole rat. Kim EB, et al. Nature, 2011 Oct 12. PMID 21993625, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclic AMP-dependent transcription factor ATF-6 beta
Names
Cyclic AMP-dependent transcription factor ATF-6 beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624754.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    24185203..24194351
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004846904.3 → XP_004846961.1  cyclic AMP-dependent transcription factor ATF-6 beta isoform X1

    UniProtKB/TrEMBL
    G5C3H8
    Conserved Domains (1) summary
    cd14700
    Location:328 → 379
    bZIP_ATF6; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain

  2. XM_004846905.3 → XP_004846962.1  cyclic AMP-dependent transcription factor ATF-6 beta isoform X2

    UniProtKB/TrEMBL
    A0A0P6J2L2
    Related
    ENSHGLP00000023407.1, ENSHGLT00000023624.1
    Conserved Domains (1) summary
    cd14700
    Location:325 → 376
    bZIP_ATF6; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain

  3. XM_021260070.1 → XP_021115729.1  cyclic AMP-dependent transcription factor ATF-6 beta isoform X3

    UniProtKB/TrEMBL
    G5C3H8
    Conserved Domains (2) summary
    cd14700
    Location:328 → 379
    bZIP_ATF6; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain
    cl26464
    Location:69 → 320
    Atrophin-1; Atrophin-1 family

  4. XM_021260071.1 → XP_021115730.1  cyclic AMP-dependent transcription factor ATF-6 beta isoform X4

    UniProtKB/TrEMBL
    A0A0P6J2L2
    Conserved Domains (2) summary
    cd14700
    Location:262 → 313
    bZIP_ATF6; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain
    cl26464
    Location:3 → 254
    Atrophin-1; Atrophin-1 family

RNA

  1. XR_002395754.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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