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Sec23ip SEC23 interacting protein [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101713885, updated on 8-Mar-2024

Summary

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Gene symbol
Sec23ip
Gene description
SEC23 interacting protein
Locus tag
GW7_03692
See related
Ensembl:ENSHGLG00000013752
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
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Genomic context

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See Sec23ip in Genome Data Viewer
Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624737.1 (26848090..26923134, complement)

NW_004624737.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110347862 Neighboring gene uncharacterized LOC110347817 Neighboring gene minichromosome maintenance complex binding protein Neighboring gene uncharacterized LOC106008870 Neighboring gene inositol polyphosphate-5-phosphatase F

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004624737 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing reveals insights into physiology and longevity of the naked mole rat. Kim EB, et al. Nature, 2011 Oct 12. PMID 21993625, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SEC23-interacting protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624737.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    26848090..26923134 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021253336.1 → XP_021108995.1  SEC23-interacting protein isoform X1

    UniProtKB/TrEMBL
    A0A0N8ETS8
    Conserved Domains (4) summary
    cd09584
    Location:638 → 706
    SAM_sec23ip; SAM domain of sec23ip
    pfam02862
    Location:784 → 990
    DDHD; DDHD domain
    cl02729
    Location:270 → 342
    WWE; WWE domain
    cl26464
    Location:26 → 271
    Atrophin-1; Atrophin-1 family

  2. XM_021253335.1 → XP_021108994.1  SEC23-interacting protein isoform X1

    UniProtKB/TrEMBL
    A0A0N8ETS8
    Conserved Domains (4) summary
    cd09584
    Location:638 → 706
    SAM_sec23ip; SAM domain of sec23ip
    pfam02862
    Location:784 → 990
    DDHD; DDHD domain
    cl02729
    Location:270 → 342
    WWE; WWE domain
    cl26464
    Location:26 → 271
    Atrophin-1; Atrophin-1 family

  3. XM_004838819.3 → XP_004838876.1  SEC23-interacting protein isoform X1

    See identical proteins and their annotated locations for XP_004838876.1

    UniProtKB/TrEMBL
    A0A0N8ETS8
    Conserved Domains (4) summary
    cd09584
    Location:638 → 706
    SAM_sec23ip; SAM domain of sec23ip
    pfam02862
    Location:784 → 990
    DDHD; DDHD domain
    cl02729
    Location:270 → 342
    WWE; WWE domain
    cl26464
    Location:26 → 271
    Atrophin-1; Atrophin-1 family

  4. XM_004838820.2 → XP_004838877.1  SEC23-interacting protein isoform X2

    UniProtKB/TrEMBL
    A0A0N8ETS8
    Conserved Domains (5) summary
    PHA03160
    Location:158 → 301
    PHA03160; hypothetical protein; Provisional
    cd09584
    Location:638 → 706
    SAM_sec23ip; SAM domain of sec23ip
    smart00454
    Location:648 → 704
    SAM; Sterile alpha motif
    pfam02862
    Location:784 → 989
    DDHD; DDHD domain
    cl02729
    Location:270 → 342
    WWE; WWE domain

  5. XM_004838818.3 → XP_004838875.1  SEC23-interacting protein isoform X1

    See identical proteins and their annotated locations for XP_004838875.1

    UniProtKB/TrEMBL
    A0A0N8ETS8
    Conserved Domains (4) summary
    cd09584
    Location:638 → 706
    SAM_sec23ip; SAM domain of sec23ip
    pfam02862
    Location:784 → 990
    DDHD; DDHD domain
    cl02729
    Location:270 → 342
    WWE; WWE domain
    cl26464
    Location:26 → 271
    Atrophin-1; Atrophin-1 family

  6. XM_004838817.2 → XP_004838874.1  SEC23-interacting protein isoform X1

    See identical proteins and their annotated locations for XP_004838874.1

    UniProtKB/TrEMBL
    A0A0N8ETS8
    Related
    ENSHGLP00000019168.1, ENSHGLT00000019359.1
    Conserved Domains (4) summary
    cd09584
    Location:638 → 706
    SAM_sec23ip; SAM domain of sec23ip
    pfam02862
    Location:784 → 990
    DDHD; DDHD domain
    cl02729
    Location:270 → 342
    WWE; WWE domain
    cl26464
    Location:26 → 271
    Atrophin-1; Atrophin-1 family

  7. XM_021253337.1 → XP_021108996.1  SEC23-interacting protein isoform X3

    UniProtKB/TrEMBL
    A0A0N8ETS8
    Conserved Domains (4) summary
    cd09584
    Location:593 → 661
    SAM_sec23ip; SAM domain of sec23ip
    pfam02862
    Location:739 → 945
    DDHD; DDHD domain
    cl02729
    Location:225 → 297
    WWE; WWE domain
    cl26464
    Location:25 → 226
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
Heading Accession and Version

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