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Colgalt1 collagen beta(1-O)galactosyltransferase 1 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101711193, updated on 8-Mar-2024

Summary

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Gene symbol
Colgalt1
Gene description
collagen beta(1-O)galactosyltransferase 1
See related
Ensembl:ENSHGLG00000019149
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
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Genomic context

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See Colgalt1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624908.1 (497898..510128, complement)

NW_004624908.1Genomic Context describing neighboring genes Neighboring gene microtubule associated protein 1S Neighboring gene unc-13 homolog A Neighboring gene niban apoptosis regulator 3 Neighboring gene 60S ribosomal protein L23a pseudogene Neighboring gene 6-phosphogluconolactonase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004624908 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables procollagen galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
procollagen galactosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624908.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    497898..510128 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004873208.3 → XP_004873265.1  procollagen galactosyltransferase 1

    UniProtKB/TrEMBL
    G5B7W2
    Related
    ENSHGLP00000026924.1, ENSHGLT00000027163.1
    Conserved Domains (2) summary
    cd00761
    Location:61 → 190
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    cl01298
    Location:345 → 530
    Glyco_transf_25; Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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