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Pnldc1 PARN like ribonuclease domain containing exonuclease 1 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101709845, updated on 8-Mar-2024

Summary

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Gene symbol
Pnldc1
Gene description
PARN like ribonuclease domain containing exonuclease 1
See related
Ensembl:ENSHGLG00000006889
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
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Genomic context

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See Pnldc1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624855.1 (3088457..3111711, complement)

NW_004624855.1Genomic Context describing neighboring genes Neighboring gene mas-related G-protein coupled receptor member H Neighboring gene rho GTPase-activating protein 12-like Neighboring gene mitochondrial ribosomal protein L18 Neighboring gene t-complex 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004624855 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables poly(A)-specific ribonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
poly(A)-specific ribonuclease PNLDC1
Names
PARN like, ribonuclease domain containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624855.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    3088457..3111711 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021247786.1 → XP_021103445.1  poly(A)-specific ribonuclease PNLDC1 isoform X1

    Conserved Domains (1) summary
    pfam04857
    Location:5 → 409
    CAF1; CAF1 family ribonuclease

  2. XM_013067180.2 → XP_012922634.1  poly(A)-specific ribonuclease PNLDC1 isoform X3

    Conserved Domains (1) summary
    pfam04857
    Location:8 → 302
    CAF1; CAF1 family ribonuclease

  3. XM_004869014.2 → XP_004869071.1  poly(A)-specific ribonuclease PNLDC1 isoform X2

    Related
    ENSHGLP00000009604.1, ENSHGLT00000009711.1
    Conserved Domains (1) summary
    pfam04857
    Location:8 → 373
    CAF1; CAF1 family ribonuclease

  4. XM_021247793.1 → XP_021103452.1  poly(A)-specific ribonuclease PNLDC1 isoform X7

    Conserved Domains (1) summary
    pfam04857
    Location:2 → 291
    CAF1; CAF1 family ribonuclease

  5. XM_021247792.1 → XP_021103451.1  poly(A)-specific ribonuclease PNLDC1 isoform X6

    Conserved Domains (1) summary
    pfam04857
    Location:14 → 304
    CAF1; CAF1 family ribonuclease

  6. XM_021247788.1 → XP_021103447.1  poly(A)-specific ribonuclease PNLDC1 isoform X5

    Conserved Domains (1) summary
    pfam04857
    Location:29 → 327
    CAF1; CAF1 family ribonuclease

  7. XM_021247791.1 → XP_021103450.1  poly(A)-specific ribonuclease PNLDC1 isoform X6

    Conserved Domains (1) summary
    pfam04857
    Location:14 → 304
    CAF1; CAF1 family ribonuclease

  8. XM_021247790.1 → XP_021103449.1  poly(A)-specific ribonuclease PNLDC1 isoform X6

    Conserved Domains (1) summary
    pfam04857
    Location:14 → 304
    CAF1; CAF1 family ribonuclease

  9. XM_013067179.2 → XP_012922633.1  poly(A)-specific ribonuclease PNLDC1 isoform X6

    See identical proteins and their annotated locations for XP_012922633.1

    Conserved Domains (1) summary
    pfam04857
    Location:14 → 304
    CAF1; CAF1 family ribonuclease

  10. XM_021247787.1 → XP_021103446.1  poly(A)-specific ribonuclease PNLDC1 isoform X4

    Conserved Domains (1) summary
    pfam04857
    Location:5 → 409
    CAF1; CAF1 family ribonuclease

RNA

  1. XR_002390633.1 RNA Sequence

  2. XR_002390634.1 RNA Sequence

Nucleotide Protein
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