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Kptn kaptin, actin binding protein [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101708408, updated on 8-Mar-2024

Summary

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Gene symbol
Kptn
Gene description
kaptin, actin binding protein
See related
Ensembl:ENSHGLG00000013757
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Also known as
kaptin
Orthologs
human mouse all
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Genomic context

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See Kptn in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624832.1 (6325032..6331915)

NW_004624832.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 541 Neighboring gene NSF attachment protein alpha Neighboring gene solute carrier family 8 member A2 Neighboring gene Meis homeobox 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004624832 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to amino acid starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of TORC1 signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of KICSTOR complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lamellipodium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kaptin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624832.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    6325032..6331915
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021245978.1 → XP_021101637.1  kaptin isoform X1

    UniProtKB/TrEMBL
    A0A0P6JVB1
    Conserved Domains (1) summary
    pfam13517
    Location:351 → 418
    VCBS; Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella

  2. XM_021245979.1 → XP_021101638.1  kaptin isoform X2

    UniProtKB/TrEMBL
    A0A0P6JVB1
    Conserved Domains (1) summary
    pfam13517
    Location:342 → 409
    VCBS; Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella

  3. XM_004867045.3 → XP_004867102.1  kaptin isoform X3

    UniProtKB/TrEMBL
    A0A0P6JVB1
    Conserved Domains (1) summary
    pfam13517
    Location:325 → 392
    VCBS; Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella

  4. XM_004867046.3 → XP_004867103.1  kaptin isoform X4

    UniProtKB/TrEMBL
    A0A0P6JVB1
    Related
    ENSHGLP00000019174.1, ENSHGLT00000019365.1
    Conserved Domains (1) summary
    pfam13517
    Location:316 → 383
    VCBS; Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
Nucleotide Protein
Heading Accession and Version

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