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Slc11a1 solute carrier family 11 member 1 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101707446, updated on 8-Mar-2024

Summary

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Gene symbol
Slc11a1
Gene description
solute carrier family 11 member 1
See related
Ensembl:ENSHGLG00000016083
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
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Genomic context

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See Slc11a1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624823.1 (6612452..6625047, complement)

NW_004624823.1Genomic Context describing neighboring genes Neighboring gene ubiquitin specific peptidase 37 Neighboring gene villin 1 Neighboring gene CTD small phosphatase 1 Neighboring gene ciliogenesis associated TTC17 interacting protein Neighboring gene transmembrane 9 superfamily member 2 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004624823 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadmium ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables manganese ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in metal ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
natural resistance-associated macrophage protein 1
Names
solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624823.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    6612452..6625047 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021244246.1 → XP_021099905.1  natural resistance-associated macrophage protein 1 isoform X8

    Conserved Domains (1) summary
    cl00456
    Location:70 → 377
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  2. XM_021244245.1 → XP_021099904.1  natural resistance-associated macrophage protein 1 isoform X6

    UniProtKB/TrEMBL
    G5AZJ0
    Conserved Domains (1) summary
    TIGR01197
    Location:70 → 452
    nramp; NRAMP (natural resistance-associated macrophage protein) metal ion transporters

  3. XM_021244243.1 → XP_021099902.1  natural resistance-associated macrophage protein 1 isoform X4

    UniProtKB/TrEMBL
    G5AZJ0
    Conserved Domains (1) summary
    TIGR01197
    Location:70 → 417
    nramp; NRAMP (natural resistance-associated macrophage protein) metal ion transporters

  4. XM_021244244.1 → XP_021099903.1  natural resistance-associated macrophage protein 1 isoform X5

    Conserved Domains (1) summary
    TIGR01197
    Location:70 → 470
    nramp; NRAMP (natural resistance-associated macrophage protein) metal ion transporters

  5. XM_004864593.3 → XP_004864650.1  natural resistance-associated macrophage protein 1 isoform X2

    UniProtKB/TrEMBL
    G5AZJ0
    Conserved Domains (2) summary
    TIGR01197
    Location:70 → 430
    nramp; NRAMP (natural resistance-associated macrophage protein) metal ion transporters
    pfam01566
    Location:92 → 437
    Nramp; Natural resistance-associated macrophage protein

  6. XM_004864592.3 → XP_004864649.1  natural resistance-associated macrophage protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A0P6J8T1, G5AZJ0
    Related
    ENSHGLP00000022549.1, ENSHGLT00000022763.1
    Conserved Domains (2) summary
    TIGR01197
    Location:70 → 470
    nramp; NRAMP (natural resistance-associated macrophage protein) metal ion transporters
    pfam01566
    Location:92 → 477
    Nramp; Natural resistance-associated macrophage protein

  7. XM_004864596.3 → XP_004864653.1  natural resistance-associated macrophage protein 1 isoform X7

    UniProtKB/TrEMBL
    G5AZJ0
    Conserved Domains (2) summary
    TIGR01197
    Location:1 → 389
    nramp; NRAMP (natural resistance-associated macrophage protein) metal ion transporters
    pfam01566
    Location:11 → 396
    Nramp; Natural resistance-associated macrophage protein

  8. XM_004864594.3 → XP_004864651.1  natural resistance-associated macrophage protein 1 isoform X3

    UniProtKB/TrEMBL
    G5AZJ0
    Related
    ENSHGLP00000022550.1, ENSHGLT00000022764.1
    Conserved Domains (2) summary
    TIGR01197
    Location:65 → 429
    nramp; NRAMP (natural resistance-associated macrophage protein) metal ion transporters
    pfam01566
    Location:65 → 436
    Nramp; Natural resistance-associated macrophage protein

RNA

  1. XR_002389304.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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