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FDFT1 farnesyl-diphosphate farnesyltransferase 1 [ Mustela putorius furo (domestic ferret) ]

Gene ID: 101693986, updated on 18-Sep-2024

Summary

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Gene symbol
FDFT1
Gene description
farnesyl-diphosphate farnesyltransferase 1
See related
Ensembl:ENSMPUG00000001829
Gene type
protein coding
RefSeq status
MODEL
Organism
Mustela putorius furo (sub-species: furo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Mustela
Orthologs
human mouse all
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Genomic context

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See FDFT1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
102 current ASM1176430v1.1 (GCF_011764305.1) Unplaced Scaffold NW_025421325.1 (19814521..19848375)
101 previous assembly MusPutFur1.0 (GCF_000215625.1) Unplaced Scaffold NW_004569260.1 (2124977..2156165)

NW_025421325.1Genomic Context describing neighboring genes Neighboring gene GATA binding protein 4 Neighboring gene nei like DNA glycosylase 2 Neighboring gene cathepsin B Neighboring gene small nucleolar RNA SNORA72

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing and development of an expression microarray platform for the domestic ferret. Bruder CE, et al. BMC Genomics, 2010 Apr 19. PMID 20403183, Free PMC Article
  2. Sequencing, annotation, and characterization of the influenza ferret infectome. León AJ, et al. J Virol, 2013 Feb. PMID 23236062, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables squalene synthase [NAD(P)H] activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in farnesyl diphosphate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
squalene synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mustela putorius furo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1176430v1.1 Primary Assembly

Genomic

  1. NW_025421325.1 Reference ASM1176430v1.1 Primary Assembly

    Range
    19814521..19848375
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045078396.1 → XP_044934331.1  squalene synthase isoform X3

    UniProtKB/TrEMBL
    A0A8U0V1P1, M1EMD2
    Conserved Domains (1) summary
    cl00210
    Location:39 → 311
    Isoprenoid_Biosyn_C1; Isoprenoid Biosynthesis enzymes, Class 1

  2. XM_045078398.1 → XP_044934333.1  squalene synthase isoform X4

    UniProtKB/TrEMBL
    A0A8U0V0K8, M1EMD2
    Conserved Domains (1) summary
    cl00210
    Location:39 → 344
    Isoprenoid_Biosyn_C1; Isoprenoid Biosynthesis enzymes, Class 1

  3. XM_004766081.3 → XP_004766138.1  squalene synthase isoform X2

    UniProtKB/TrEMBL
    M1EMD2, M3XRW1
    Related
    ENSMPUP00000001811.1
    Conserved Domains (1) summary
    cl00210
    Location:39 → 370
    Isoprenoid_Biosyn_C1; Isoprenoid Biosynthesis enzymes, Class 1

  4. XM_013063291.2 → XP_012918745.1  squalene synthase isoform X1

    UniProtKB/TrEMBL
    A0A8U0NZT8
    Conserved Domains (1) summary
    cl00210
    Location:109 → 440
    Isoprenoid_Biosyn_C1; Isoprenoid Biosynthesis enzymes, Class 1
Nucleotide Protein
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