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CHID1 chitinase domain containing 1 [ Mustela putorius furo (domestic ferret) ]

Gene ID: 101693856, updated on 8-Mar-2024

Summary

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Gene symbol
CHID1
Gene description
chitinase domain containing 1
See related
Ensembl:ENSMPUG00000009305
Gene type
protein coding
RefSeq status
MODEL
Organism
Mustela putorius furo (sub-species: furo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Mustela
Orthologs
human mouse all
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Genomic context

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See CHID1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
102 current ASM1176430v1.1 (GCF_011764305.1) Unplaced Scaffold NW_025421288.1 (16476146..16501766)
101 previous assembly MusPutFur1.0 (GCF_000215625.1) Unplaced Scaffold NW_004569519.1 (567217..592840, complement)

NW_025421288.1Genomic Context describing neighboring genes Neighboring gene mucin 6, oligomeric mucus/gel-forming Neighboring gene adaptor related protein complex 2 subunit alpha 2 Neighboring gene U6atac minor spliceosomal RNA Neighboring gene tetraspanin 4 Neighboring gene RNA polymerase II, I and III subunit L

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De-novo transcriptome sequencing of a normalized cDNA pool from influenza infected ferrets. Camp JV, et al. PLoS One, 2012. PMID 22606336, Free PMC Article
  2. Sequencing, annotation, and characterization of the influenza ferret infectome. León AJ, et al. J Virol, 2013 Feb. PMID 23236062, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oligosaccharide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chitinase domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mustela putorius furo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1176430v1.1 Primary Assembly

Genomic

  1. NW_025421288.1 Reference ASM1176430v1.1 Primary Assembly

    Range
    16476146..16501766
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004781132.3 → XP_004781189.2  chitinase domain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8U0NHP4, M3YD24
    Conserved Domains (1) summary
    cd02876
    Location:77 → 393
    GH18_SI-CLP; Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl ...

  2. XM_004781131.3 → XP_004781188.2  chitinase domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8U0T834, M3YD24
    Conserved Domains (1) summary
    cd02876
    Location:137 → 453
    GH18_SI-CLP; Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl ...

  3. XM_045066839.1 → XP_044922774.1  chitinase domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8U0UNH0, M3YD24
    Conserved Domains (1) summary
    cd02876
    Location:137 → 419
    GH18_SI-CLP; Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl ...

  4. XM_045066851.1 → XP_044922786.1  chitinase domain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8U0NHP4, M3YD24
    Conserved Domains (1) summary
    cd02876
    Location:77 → 393
    GH18_SI-CLP; Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl ...

  5. XM_013050286.2 → XP_012905740.2  chitinase domain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8U0NHP4, M3YD24
    Conserved Domains (1) summary
    cd02876
    Location:77 → 393
    GH18_SI-CLP; Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl ...

RNA

  1. XR_201391.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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