U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CHRNE cholinergic receptor nicotinic epsilon subunit [ Mustela putorius furo (domestic ferret) ]

Gene ID: 101693586, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
CHRNE
Gene description
cholinergic receptor nicotinic epsilon subunit
See related
Ensembl:ENSMPUG00000010857
Gene type
protein coding
RefSeq status
MODEL
Organism
Mustela putorius furo (sub-species: furo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Mustela
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CHRNE in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
102 current ASM1176430v1.1 (GCF_011764305.1) Unplaced Scaffold NW_025421447.1 (6232701..6238870)
101 previous assembly MusPutFur1.0 (GCF_000215625.1) Unplaced Scaffold NW_004569217.1 (7396402..7402842, complement)

NW_025421447.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 25 member 11 Neighboring gene ring finger protein 167 Neighboring gene glycoprotein Ib platelet subunit alpha Neighboring gene chromosome unknown C17orf107 homolog Neighboring gene misshapen like kinase 1 Neighboring gene phospholipase D2 Neighboring gene translation initiation factor IF-2-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequencing, annotation, and characterization of the influenza ferret infectome. León AJ, et al. J Virol, 2013 Feb. PMID 23236062, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylcholine-gated monoatomic cation-selective channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monoatomic ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of membrane potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
acetylcholine receptor subunit epsilon
Names
cholinergic receptor, nicotinic, epsilon

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Mustela putorius furo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1176430v1.1 Primary Assembly

Genomic

  1. NW_025421447.1 Reference ASM1176430v1.1 Primary Assembly

    Range
    6232701..6238870
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013060313.2 → XP_012915767.2  acetylcholine receptor subunit epsilon isoform X3

    UniProtKB/TrEMBL
    A0A8U0TFE2
    Conserved Domains (2) summary
    cd19064
    Location:346 → 437
    LGIC_TM_nAChR; transmembrane domain of nicotinic acetylcholine receptor (nAChR)
    cl28912
    Location:188 → 344
    LGIC_ECD; extracellular domain (ECD) of Cys-loop neurotransmitter-gated ion channels (also known as ligand-gated ion channel (LGIC))

  2. XM_013060311.2 → XP_012915765.2  acetylcholine receptor subunit epsilon isoform X1

    UniProtKB/TrEMBL
    A0A8U0TFN3
    Conserved Domains (2) summary
    cd19064
    Location:354 → 445
    LGIC_TM_nAChR; transmembrane domain of nicotinic acetylcholine receptor (nAChR)
    cl28912
    Location:49 → 352
    LGIC_ECD; extracellular domain (ECD) of Cys-loop neurotransmitter-gated ion channels (also known as ligand-gated ion channel (LGIC))

  3. XM_013060315.2 → XP_012915769.2  acetylcholine receptor subunit epsilon isoform X6

    UniProtKB/TrEMBL
    A0A8U0NX02
    Conserved Domains (2) summary
    cd19064
    Location:322 → 413
    LGIC_TM_nAChR; transmembrane domain of nicotinic acetylcholine receptor (nAChR)
    cl28912
    Location:49 → 320
    LGIC_ECD; extracellular domain (ECD) of Cys-loop neurotransmitter-gated ion channels (also known as ligand-gated ion channel (LGIC))

  4. XM_013060312.2 → XP_012915766.2  acetylcholine receptor subunit epsilon isoform X2

    UniProtKB/TrEMBL
    A0A8U0NY98
    Conserved Domains (2) summary
    cd19064
    Location:354 → 445
    LGIC_TM_nAChR; transmembrane domain of nicotinic acetylcholine receptor (nAChR)
    cl28912
    Location:49 → 352
    LGIC_ECD; extracellular domain (ECD) of Cys-loop neurotransmitter-gated ion channels (also known as ligand-gated ion channel (LGIC))

  5. XM_013060316.2 → XP_012915770.2  acetylcholine receptor subunit epsilon isoform X7

    UniProtKB/TrEMBL
    A0A8U0NX06
    Conserved Domains (2) summary
    cd19064
    Location:273 → 364
    LGIC_TM_nAChR; transmembrane domain of nicotinic acetylcholine receptor (nAChR)
    cl28912
    Location:49 → 271
    LGIC_ECD; extracellular domain (ECD) of Cys-loop neurotransmitter-gated ion channels (also known as ligand-gated ion channel (LGIC))

  6. XM_013060317.2 → XP_012915771.2  acetylcholine receptor subunit epsilon isoform X8

    UniProtKB/TrEMBL
    A0A8U0TEJ7
    Conserved Domains (2) summary
    cd19030
    Location:49 → 239
    LGIC_ECD_nAChR_E; extracellular domain of nicotinic acetylcholine receptor subunit epsilon (CHRNE)
    cd19064
    Location:241 → 332
    LGIC_TM_nAChR; transmembrane domain of nicotinic acetylcholine receptor (nAChR)

  7. XM_013060314.2 → XP_012915768.1  acetylcholine receptor subunit epsilon isoform X4

    UniProtKB/TrEMBL
    A0A8U0NXA8
    Conserved Domains (2) summary
    pfam02931
    Location:24 → 353
    Neur_chan_LBD; Neurotransmitter-gated ion-channel ligand binding domain
    pfam02932
    Location:360 → 594
    Neur_chan_memb; Neurotransmitter-gated ion-channel transmembrane region

  8. XM_004760428.3 → XP_004760485.1  acetylcholine receptor subunit epsilon isoform X5

    UniProtKB/TrEMBL
    A0A8U0MYZ4, M3YHG2
    Conserved Domains (2) summary
    pfam02931
    Location:24 → 353
    Neur_chan_LBD; Neurotransmitter-gated ion-channel ligand binding domain
    pfam02932
    Location:360 → 587
    Neur_chan_memb; Neurotransmitter-gated ion-channel transmembrane region

  9. XM_004760429.3 → XP_004760486.1  acetylcholine receptor subunit epsilon isoform X9

    UniProtKB/TrEMBL
    A0A8U0SZ18, M3YHG2
    Related
    ENSMPUP00000010769.1
    Conserved Domains (3) summary
    TIGR00860
    Location:21 → 475
    LIC; Cation transporter family protein
    pfam02931
    Location:24 → 240
    Neur_chan_LBD; Neurotransmitter-gated ion-channel ligand binding domain
    pfam02932
    Location:247 → 474
    Neur_chan_memb; Neurotransmitter-gated ion-channel transmembrane region

RNA

  1. XR_001180768.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.