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CLEC5A C-type lectin domain containing 5A [ Mustela putorius furo (domestic ferret) ]

Gene ID: 101690778, updated on 8-Mar-2024

Summary

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Gene symbol
CLEC5A
Gene description
C-type lectin domain containing 5A
See related
Ensembl:ENSMPUG00000003222
Gene type
protein coding
RefSeq status
MODEL
Organism
Mustela putorius furo (sub-species: furo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Mustela
Orthologs
human mouse all
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Genomic context

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See CLEC5A in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
102 current ASM1176430v1.1 (GCF_011764305.1) Unplaced Scaffold NW_025421998.1 (94412110..94425165, complement)
101 previous assembly MusPutFur1.0 (GCF_000215625.1) Unplaced Scaffold NW_004569148.1 (274288..287518)

NW_025421998.1Genomic Context describing neighboring genes Neighboring gene olfactory receptor 9A4-like Neighboring gene olfactory receptor 9A4 Neighboring gene maltase-glucoamylase Neighboring gene taste 2 receptor member 38 Neighboring gene uncharacterized LOC101690307

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing and development of an expression microarray platform for the domestic ferret. Bruder CE, et al. BMC Genomics, 2010 Apr 19. PMID 20403183, Free PMC Article
  2. De-novo transcriptome sequencing of a normalized cDNA pool from influenza infected ferrets. Camp JV, et al. PLoS One, 2012. PMID 22606336, Free PMC Article
  3. Sequencing, annotation, and characterization of the influenza ferret infectome. León AJ, et al. J Virol, 2013 Feb. PMID 23236062, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables virus receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
C-type lectin domain family 5 member A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mustela putorius furo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1176430v1.1 Primary Assembly

Genomic

  1. NW_025421998.1 Reference ASM1176430v1.1 Primary Assembly

    Range
    94412110..94425165 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004741606.3 → XP_004741663.1  C-type lectin domain family 5 member A isoform X1

    UniProtKB/TrEMBL
    M3XVT9
    Related
    ENSMPUP00000003189.1
    Conserved Domains (1) summary
    cd03593
    Location:68 → 181
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

  2. XM_045063085.1 → XP_044919020.1  C-type lectin domain family 5 member A isoform X2

    UniProtKB/TrEMBL
    A0A8U0UKL8
    Conserved Domains (1) summary
    cd03593
    Location:48 → 161
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

  3. XM_013049624.2 → XP_012905078.1  C-type lectin domain family 5 member A isoform X3

    UniProtKB/TrEMBL
    A0A8U0NLE6, M1ENL5
    Conserved Domains (1) summary
    cd03593
    Location:68 → 147
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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