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CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit X [ Mustela putorius furo (domestic ferret) ]

Gene ID: 101690748, updated on 8-Mar-2024

Summary

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Gene symbol
CLPX
Gene description
caseinolytic mitochondrial matrix peptidase chaperone subunit X
See related
Ensembl:ENSMPUG00000000518
Gene type
protein coding
RefSeq status
MODEL
Organism
Mustela putorius furo (sub-species: furo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Mustela
Orthologs
human mouse all
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Genomic context

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See CLPX in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
102 current ASM1176430v1.1 (GCF_011764305.1) Unplaced Scaffold NW_025422045.1 (8760225..8804267, complement)
101 previous assembly MusPutFur1.0 (GCF_000215625.1) Unplaced Scaffold NW_004569208.1 (4549371..4593089)

NW_025422045.1Genomic Context describing neighboring genes Neighboring gene ubiquitin associated protein 1 like Neighboring gene programmed cell death 7 Neighboring gene cartilage intermediate layer protein Neighboring gene poly(ADP-ribose) polymerase family member 16

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De-novo transcriptome sequencing of a normalized cDNA pool from influenza infected ferrets. Camp JV, et al. PLoS One, 2012. PMID 22606336, Free PMC Article
  2. Sequencing, annotation, and characterization of the influenza ferret infectome. León AJ, et al. J Virol, 2013 Feb. PMID 23236062, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent protein folding chaperone IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial
Names
ClpX caseinolytic peptidase X homolog
ClpX caseinolytic peptidase X-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mustela putorius furo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1176430v1.1 Primary Assembly

Genomic

  1. NW_025422045.1 Reference ASM1176430v1.1 Primary Assembly

    Range
    8760225..8804267 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004758678.2 → XP_004758735.1  ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A8U0MXB8, M1EJX9
    Conserved Domains (4) summary
    smart01086
    Location:495 → 589
    ClpB_D2-small; C-terminal, D2-small domain, of ClpB protein
    TIGR00382
    Location:102 → 586
    clpX; endopeptidase Clp ATP-binding regulatory subunit (clpX)
    pfam07724
    Location:272 → 488
    AAA_2; AAA domain (Cdc48 subfamily)
    cl02609
    Location:104 → 132
    Zn-ribbon; C-terminal zinc ribbon domain of RNA polymerase intrinsic transcript cleavage subunit

  2. XM_004758677.3 → XP_004758734.1  ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X1

    UniProtKB/TrEMBL
    M1EJX9, M3XN62
    Related
    ENSMPUP00000000512.1
    Conserved Domains (4) summary
    smart01086
    Location:509 → 603
    ClpB_D2-small; C-terminal, D2-small domain, of ClpB protein
    TIGR00382
    Location:102 → 600
    clpX; endopeptidase Clp ATP-binding regulatory subunit (clpX)
    pfam07724
    Location:286 → 502
    AAA_2; AAA domain (Cdc48 subfamily)
    cl02609
    Location:104 → 132
    Zn-ribbon; C-terminal zinc ribbon domain of RNA polymerase intrinsic transcript cleavage subunit

  3. XM_004758679.3 → XP_004758736.1  ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X3

    UniProtKB/TrEMBL
    A0A8U0MWU3, M1EJX9
    Conserved Domains (4) summary
    smart01086
    Location:493 → 587
    ClpB_D2-small; C-terminal, D2-small domain, of ClpB protein
    TIGR00382
    Location:86 → 584
    clpX; endopeptidase Clp ATP-binding regulatory subunit (clpX)
    pfam07724
    Location:270 → 486
    AAA_2; AAA domain (Cdc48 subfamily)
    cl02609
    Location:88 → 116
    Zn-ribbon; C-terminal zinc ribbon domain of RNA polymerase intrinsic transcript cleavage subunit
Nucleotide Protein
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