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UPF3A UPF3A regulator of nonsense mediated mRNA decay [ Mustela putorius furo (domestic ferret) ]

Gene ID: 101686616, updated on 8-Mar-2024

Summary

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Gene symbol
UPF3A
Gene description
UPF3A regulator of nonsense mediated mRNA decay
See related
Ensembl:ENSMPUG00000009139
Gene type
protein coding
RefSeq status
MODEL
Organism
Mustela putorius furo (sub-species: furo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Mustela
Orthologs
human mouse all
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Genomic context

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See UPF3A in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
102 current ASM1176430v1.1 (GCF_011764305.1) Unplaced Scaffold NW_025421412.1 (114138..133831, complement)
101 previous assembly MusPutFur1.0 (GCF_000215625.1) Unplaced Scaffold NW_004569159.1 (28310..48123, complement)

NW_025421412.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123392404 Neighboring gene basic proline-rich protein-like Neighboring gene chromosome alignment maintaining phosphoprotein 1 Neighboring gene cell division cycle 16 Neighboring gene CFAP97 domain containing 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequencing, annotation, and characterization of the influenza ferret infectome. León AJ, et al. J Virol, 2013 Feb. PMID 23236062, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables telomeric DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
regulator of nonsense transcripts 3A
Names
UPF3 regulator of nonsense transcripts homolog A
UPF3 regulator of nonsense transcripts-like protein A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mustela putorius furo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1176430v1.1 Primary Assembly

Genomic

  1. NW_025421412.1 Reference ASM1176430v1.1 Primary Assembly

    Range
    114138..133831 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045081226.1 → XP_044937161.1  regulator of nonsense transcripts 3A isoform X2

    UniProtKB/TrEMBL
    A0A8U0S652, G9KWN5

  2. XM_004745972.3 → XP_004746029.1  regulator of nonsense transcripts 3A isoform X1

    UniProtKB/TrEMBL
    G9KWN5, M3YCK6
    Related
    ENSMPUP00000009063.1
    Conserved Domains (1) summary
    pfam03467
    Location:68 → 225
    Smg4_UPF3; Smg-4/UPF3 family

  3. XM_013053002.2 → XP_012908456.1  regulator of nonsense transcripts 3A isoform X3

    UniProtKB/TrEMBL
    A0A8U0TC87, G9KWN5
    Conserved Domains (1) summary
    pfam03467
    Location:68 → 225
    Smg4_UPF3; Smg-4/UPF3 family

  4. XM_045081227.1 → XP_044937162.1  regulator of nonsense transcripts 3A isoform X4

    UniProtKB/TrEMBL
    A0A8U0S639

  5. XM_045081228.1 → XP_044937163.1  regulator of nonsense transcripts 3A isoform X5

    UniProtKB/TrEMBL
    A0A8U0S6A5

RNA

  1. XR_006607109.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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