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RPAP2 RNA polymerase II associated protein 2 [ Mustela putorius furo (domestic ferret) ]

Gene ID: 101685879, updated on 8-Mar-2024

Summary

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Gene symbol
RPAP2
Gene description
RNA polymerase II associated protein 2
See related
Ensembl:ENSMPUG00000004227
Gene type
protein coding
RefSeq status
MODEL
Organism
Mustela putorius furo (sub-species: furo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Mustela
Orthologs
human mouse all
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Genomic context

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See RPAP2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
102 current ASM1176430v1.1 (GCF_011764305.1) Unplaced Scaffold NW_025422005.1 (77975482..78058743)
101 previous assembly MusPutFur1.0 (GCF_000215625.1) Unplaced Scaffold NW_004569177.1 (6201109..6284124, complement)

NW_025422005.1Genomic Context describing neighboring genes Neighboring gene BTB domain containing 8 Neighboring gene chromosome unknown C1orf146 homolog Neighboring gene glomulin, FKBP associated protein Neighboring gene U6 spliceosomal RNA Neighboring gene growth factor independent 1 transcriptional repressor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De-novo transcriptome sequencing of a normalized cDNA pool from influenza infected ferrets. Camp JV, et al. PLoS One, 2012. PMID 22606336, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II CTD heptapeptide repeat phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase core enzyme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative RNA polymerase II subunit B1 CTD phosphatase RPAP2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mustela putorius furo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1176430v1.1 Primary Assembly

Genomic

  1. NW_025422005.1 Reference ASM1176430v1.1 Primary Assembly

    Range
    77975482..78058743
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045064849.1 → XP_044920784.1  putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 isoform X1

    UniProtKB/TrEMBL
    A0A8U0UN04, G9KLQ3

  2. XM_004752597.3 → XP_004752654.1  putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 isoform X3

    UniProtKB/TrEMBL
    G9KLQ3, M3XYP2
    Related
    ENSMPUP00000004193.1
    Conserved Domains (1) summary
    pfam04181
    Location:80 → 152
    RPAP2_Rtr1; Rtr1/RPAP2 family

  3. XM_045064851.1 → XP_044920786.1  putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 isoform X2

    UniProtKB/TrEMBL
    A0A8U0UNL9, G9KLQ3

  4. XM_013056151.2 → XP_012911605.1  putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 isoform X4

    UniProtKB/TrEMBL
    A0A8U0TDN2, G9KLQ3
    Conserved Domains (1) summary
    pfam04181
    Location:80 → 152
    RPAP2_Rtr1; Rtr1/RPAP2 family

RNA

  1. XR_006601820.1 RNA Sequence

  2. XR_006601821.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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