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NIP7 nucleolar pre-rRNA processing protein NIP7 [ Mustela putorius furo (domestic ferret) ]

Gene ID: 101684389, updated on 8-Mar-2024

Summary

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Gene symbol
NIP7
Gene description
nucleolar pre-rRNA processing protein NIP7
Gene type
protein coding
RefSeq status
MODEL
Organism
Mustela putorius furo (sub-species: furo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Mustela
Orthologs
human mouse all
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Genomic context

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See NIP7 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
102 current ASM1176430v1.1 (GCF_011764305.1) Unplaced Scaffold NW_025421304.1 (28006900..28065071)
101 previous assembly MusPutFur1.0 (GCF_000215625.1) Unplaced Scaffold NW_004569154.1 (19988798..20046943)

NW_025421304.1Genomic Context describing neighboring genes Neighboring gene vacuolar protein sorting 4 homolog A Neighboring gene uncharacterized LOC106005032 Neighboring gene component of oligomeric golgi complex 8 Neighboring gene transmembrane p24 trafficking protein 6 Neighboring gene telomeric repeat binding factor 2 Neighboring gene cytochrome b5 type B Neighboring gene small nucleolar RNA SNORA17 Neighboring gene ER membrane protein complex subunit 3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De-novo transcriptome sequencing of a normalized cDNA pool from influenza infected ferrets. Camp JV, et al. PLoS One, 2012. PMID 22606336, Free PMC Article
  2. Sequencing, annotation, and characterization of the influenza ferret infectome. León AJ, et al. J Virol, 2013 Feb. PMID 23236062, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ribosomal large subunit biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of preribosome, large subunit precursor IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
60S ribosome subunit biogenesis protein NIP7 homolog
Names
NIP7, nucleolar pre-rRNA processing protein
nuclear import 7-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mustela putorius furo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1176430v1.1 Primary Assembly

Genomic

  1. NW_025421304.1 Reference ASM1176430v1.1 Primary Assembly

    Range
    28006900..28065071
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013052277.2 → XP_012907731.1  60S ribosome subunit biogenesis protein NIP7 homolog isoform X2

    UniProtKB/TrEMBL
    A0A8U0TB93
    Conserved Domains (1) summary
    cl00607
    Location:1 → 141
    PUA; PUA domain

  2. XM_045076236.1 → XP_044932171.1  60S ribosome subunit biogenesis protein NIP7 homolog isoform X3

    UniProtKB/TrEMBL
    A0A8U0UZM1
    Conserved Domains (1) summary
    cl00607
    Location:1 → 141
    PUA; PUA domain

  3. XM_004744537.3 → XP_004744594.1  60S ribosome subunit biogenesis protein NIP7 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8U0MJP0, G9KDE2
    Conserved Domains (1) summary
    COG1374
    Location:1 → 176
    NIP7; Rbosome biogenesis protein Nip4, contains PUA domain [Translation, ribosomal structure and biogenesis]

  4. XM_004744538.3 → XP_004744595.1  60S ribosome subunit biogenesis protein NIP7 homolog isoform X4

    UniProtKB/TrEMBL
    A0A8U0MJN3
    Conserved Domains (2) summary
    cd21146
    Location:2 → 59
    Nip7_N_euk; N-terminal domain of eukaryotic 60S ribosome subunit biogenesis protein Nip7 and similar proteins
    cd21151
    Location:66 → 143
    PUA_Nip7-like; PUA RNA binding domain of ribosome assembly factor Nip7 and similar proteins
Nucleotide Protein
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