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TGDS TDP-glucose 4,6-dehydratase [ Mustela putorius furo (domestic ferret) ]

Gene ID: 101684097, updated on 8-Mar-2024

Summary

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Gene symbol
TGDS
Gene description
TDP-glucose 4,6-dehydratase
See related
Ensembl:ENSMPUG00000011849
Gene type
protein coding
RefSeq status
MODEL
Organism
Mustela putorius furo (sub-species: furo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Mustela
Orthologs
human mouse all
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Genomic context

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See TGDS in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
102 current ASM1176430v1.1 (GCF_011764305.1) Unplaced Scaffold NW_025422117.1 (1370458..1387439)
101 previous assembly MusPutFur1.0 (GCF_000215625.1) Unplaced Scaffold NW_004569159.1 (15483370..15500417)

NW_025422117.1Genomic Context describing neighboring genes Neighboring gene SRY-box transcription factor 21 Neighboring gene G protein-coupled receptor 180 Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene dopachrome tautomerase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing and development of an expression microarray platform for the domestic ferret. Bruder CE, et al. BMC Genomics, 2010 Apr 19. PMID 20403183, Free PMC Article
  2. Sequencing, annotation, and characterization of the influenza ferret infectome. León AJ, et al. J Virol, 2013 Feb. PMID 23236062, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dTDP-glucose 4,6-dehydratase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleotide-sugar metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dTDP-D-glucose 4,6-dehydratase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mustela putorius furo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1176430v1.1 Primary Assembly

Genomic

  1. NW_025422117.1 Reference ASM1176430v1.1 Primary Assembly

    Range
    1370458..1387439
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004746148.3 → XP_004746205.2  dTDP-D-glucose 4,6-dehydratase isoform X1

    UniProtKB/TrEMBL
    G9KT37, M3YK99
    Related
    ENSMPUP00000011756.1
    Conserved Domains (1) summary
    cd05246
    Location:18 → 336
    dTDP_GD_SDR_e; dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs

  2. XM_013053144.2 → XP_012908598.1  dTDP-D-glucose 4,6-dehydratase isoform X3

    UniProtKB/TrEMBL
    A0A8U0TCM7, G9KT37
    Conserved Domains (1) summary
    cd05246
    Location:1 → 304
    dTDP_GD_SDR_e; dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs

  3. XM_013053143.2 → XP_012908597.1  dTDP-D-glucose 4,6-dehydratase isoform X2

    See identical proteins and their annotated locations for XP_012908597.1

    UniProtKB/TrEMBL
    A0A8U0TCF3, G9KT37
    Conserved Domains (2) summary
    cd05246
    Location:4 → 310
    dTDP_GD_SDR_e; dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs
    COG1088
    Location:5 → 314
    RfbB; dTDP-D-glucose 4,6-dehydratase [Cell wall/membrane/envelope biogenesis]

  4. XM_013053142.2 → XP_012908596.1  dTDP-D-glucose 4,6-dehydratase isoform X2

    See identical proteins and their annotated locations for XP_012908596.1

    UniProtKB/TrEMBL
    A0A8U0TCF3, G9KT37
    Conserved Domains (2) summary
    cd05246
    Location:4 → 310
    dTDP_GD_SDR_e; dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs
    COG1088
    Location:5 → 314
    RfbB; dTDP-D-glucose 4,6-dehydratase [Cell wall/membrane/envelope biogenesis]
Nucleotide Protein
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