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STX5 syntaxin 5 [ Mustela putorius furo (domestic ferret) ]

Gene ID: 101682657, updated on 8-Mar-2024

Summary

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Gene symbol
STX5
Gene description
syntaxin 5
See related
Ensembl:ENSMPUG00000013614
Gene type
protein coding
RefSeq status
MODEL
Organism
Mustela putorius furo (sub-species: furo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Mustela
Orthologs
human mouse all
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Genomic context

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See STX5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
102 current ASM1176430v1.1 (GCF_011764305.1) Unplaced Scaffold NW_025421288.1 (8486050..8505897, complement)
101 previous assembly MusPutFur1.0 (GCF_000215625.1) Unplaced Scaffold NW_004569294.1 (2680561..2701628)

NW_025421288.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 223 Neighboring gene nuclear RNA export factor 1 Neighboring gene uncharacterized LOC123387305 Neighboring gene testis-expressed protein 54-like Neighboring gene WD repeat domain 74

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De-novo transcriptome sequencing of a normalized cDNA pool from influenza infected ferrets. Camp JV, et al. PLoS One, 2012. PMID 22606336, Free PMC Article
  2. Sequencing, annotation, and characterization of the influenza ferret infectome. León AJ, et al. J Virol, 2013 Feb. PMID 23236062, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle docking IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syntaxin-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mustela putorius furo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1176430v1.1 Primary Assembly

Genomic

  1. NW_025421288.1 Reference ASM1176430v1.1 Primary Assembly

    Range
    8486050..8505897 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013044568.2 → XP_012900022.1  syntaxin-5 isoform X1

    See identical proteins and their annotated locations for XP_012900022.1

    UniProtKB/TrEMBL
    G9KRT0
    Related
    ENSMPUP00000013511.1
    Conserved Domains (3) summary
    COG5325
    Location:182 → 324
    COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
    cd15844
    Location:266 → 338
    SNARE_syntaxin5; SNARE motif of syntaxin 5
    pfam11416
    Location:54 → 73
    Syntaxin-5_N; Syntaxin-5 N-terminal, Sly1p-binding domain

  2. XM_013044569.2 → XP_012900023.1  syntaxin-5 isoform X2

    UniProtKB/TrEMBL
    A0A8U0ULM8
    Conserved Domains (3) summary
    COG5325
    Location:128 → 270
    COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
    cd15844
    Location:212 → 284
    SNARE_syntaxin5; SNARE motif of syntaxin 5
    pfam11416
    Location:1 → 19
    Syntaxin-5_N; Syntaxin-5 N-terminal, Sly1p-binding domain

  3. XM_045063803.1 → XP_044919738.1  syntaxin-5 isoform X2

    UniProtKB/TrEMBL
    A0A8U0ULM8
    Conserved Domains (3) summary
    COG5325
    Location:128 → 270
    COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
    cd15844
    Location:212 → 284
    SNARE_syntaxin5; SNARE motif of syntaxin 5
    pfam11416
    Location:1 → 19
    Syntaxin-5_N; Syntaxin-5 N-terminal, Sly1p-binding domain

  4. XM_004770258.3 → XP_004770315.1  syntaxin-5 isoform X1

    See identical proteins and their annotated locations for XP_004770315.1

    UniProtKB/TrEMBL
    G9KRT0
    Conserved Domains (3) summary
    COG5325
    Location:182 → 324
    COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
    cd15844
    Location:266 → 338
    SNARE_syntaxin5; SNARE motif of syntaxin 5
    pfam11416
    Location:54 → 73
    Syntaxin-5_N; Syntaxin-5 N-terminal, Sly1p-binding domain

  5. XM_004770256.3 → XP_004770313.1  syntaxin-5 isoform X1

    See identical proteins and their annotated locations for XP_004770313.1

    UniProtKB/TrEMBL
    G9KRT0
    Conserved Domains (3) summary
    COG5325
    Location:182 → 324
    COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
    cd15844
    Location:266 → 338
    SNARE_syntaxin5; SNARE motif of syntaxin 5
    pfam11416
    Location:54 → 73
    Syntaxin-5_N; Syntaxin-5 N-terminal, Sly1p-binding domain

  6. XM_045063808.1 → XP_044919743.1  syntaxin-5 isoform X3

    UniProtKB/TrEMBL
    A0A8U0R970
    Conserved Domains (1) summary
    pfam11416
    Location:54 → 73
    Syntaxin-5_N; Syntaxin-5 N-terminal, Sly1p-binding domain
Nucleotide Protein
Heading Accession and Version

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