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SFTPC surfactant protein C [ Mustela putorius furo (domestic ferret) ]

Gene ID: 101678507, updated on 8-Mar-2024

Summary

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Gene symbol
SFTPC
Gene description
surfactant protein C
See related
Ensembl:ENSMPUG00000003875
Gene type
protein coding
RefSeq status
MODEL
Organism
Mustela putorius furo (sub-species: furo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Mustela
Also known as
SP-C
Orthologs
human mouse all
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Genomic context

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See SFTPC in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
102 current ASM1176430v1.1 (GCF_011764305.1) Unplaced Scaffold NW_025422082.1 (2839664..2842429)
101 previous assembly MusPutFur1.0 (GCF_000215625.1) Unplaced Scaffold NW_004569236.1 (5537025..5539785, complement)

NW_025422082.1Genomic Context describing neighboring genes Neighboring gene receptor accessory protein 4 Neighboring gene leucine rich repeat LGI family member 3 Neighboring gene bone morphogenetic protein 1 Neighboring gene phytanoyl-CoA 2-hydroxylase interacting protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing and development of an expression microarray platform for the domestic ferret. Bruder CE, et al. BMC Genomics, 2010 Apr 19. PMID 20403183, Free PMC Article
  2. De-novo transcriptome sequencing of a normalized cDNA pool from influenza infected ferrets. Camp JV, et al. PLoS One, 2012. PMID 22606336, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in respiratory gaseous exchange by respiratory system IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in alveolar lamellar body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pulmonary surfactant-associated protein C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mustela putorius furo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1176430v1.1 Primary Assembly

Genomic

  1. NW_025422082.1 Reference ASM1176430v1.1 Primary Assembly

    Range
    2839664..2842429
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013061806.2 → XP_012917260.1  pulmonary surfactant-associated protein C isoform X1

    UniProtKB/TrEMBL
    A0A8U0NYC5, G9KNG4
    Conserved Domains (3) summary
    smart00019
    Location:1 → 218
    SF_P; Pulmonary surfactant proteins
    smart01039
    Location:94 → 218
    BRICHOS; The BRICHOS domain is found in a variety of proteins implicated in dementia, respiratory distress and cancer
    pfam08999
    Location:1 → 93
    SP_C-Propep; Surfactant protein C, N terminal propeptide

  2. XM_004763305.3 → XP_004763362.1  pulmonary surfactant-associated protein C isoform X2

    UniProtKB/TrEMBL
    G9KNG4, M3XXP5
    Related
    ENSMPUP00000003845.1
    Conserved Domains (3) summary
    smart00019
    Location:1 → 190
    SF_P; Pulmonary surfactant proteins
    smart01039
    Location:94 → 190
    BRICHOS; The BRICHOS domain is found in a variety of proteins implicated in dementia, respiratory distress and cancer
    pfam08999
    Location:1 → 93
    SP_C-Propep; Surfactant protein C, N terminal propeptide

  3. XM_013061808.2 → XP_012917262.1  pulmonary surfactant-associated protein C isoform X3

    UniProtKB/TrEMBL
    A0A8U0TF83
    Conserved Domains (3) summary
    smart00019
    Location:1 → 165
    SF_P; Pulmonary surfactant proteins
    smart01039
    Location:41 → 165
    BRICHOS; The BRICHOS domain is found in a variety of proteins implicated in dementia, respiratory distress and cancer
    pfam08999
    Location:15 → 40
    SP_C-Propep; Surfactant protein C, N terminal propeptide
Nucleotide Protein
Heading Accession and Version

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