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SYNJ1 synaptojanin 1 [ Mustela putorius furo (domestic ferret) ]

Gene ID: 101672039, updated on 8-Mar-2024

Summary

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Gene symbol
SYNJ1
Gene description
synaptojanin 1
See related
Ensembl:ENSMPUG00000001153
Gene type
protein coding
RefSeq status
MODEL
Organism
Mustela putorius furo (sub-species: furo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Mustela
Orthologs
human mouse all
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Genomic context

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See SYNJ1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
33
Annotation release Status Assembly Chr Location
102 current ASM1176430v1.1 (GCF_011764305.1) Unplaced Scaffold NW_025421491.1 (855298..942309)
101 previous assembly MusPutFur1.0 (GCF_000215625.1) Unplaced Scaffold NW_004569199.1 (8093608..8181753, complement)

NW_025421491.1Genomic Context describing neighboring genes Neighboring gene exosomal polycystin 1 interacting protein Neighboring gene PAX3 and PAX7 binding protein 1 Neighboring gene cilia and flagella associated protein 298 Neighboring gene uncharacterized LOC123393385

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De-novo transcriptome sequencing of a normalized cDNA pool from influenza infected ferrets. Camp JV, et al. PLoS One, 2012. PMID 22606336, Free PMC Article
  2. Sequencing, annotation, and characterization of the influenza ferret infectome. León AJ, et al. J Virol, 2013 Feb. PMID 23236062, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptojanin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mustela putorius furo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1176430v1.1 Primary Assembly

Genomic

  1. NW_025421491.1 Reference ASM1176430v1.1 Primary Assembly

    Range
    855298..942309
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013058844.2 → XP_012914298.1  synaptojanin-1 isoform X1

    UniProtKB/TrEMBL
    A0A8U0TF30, M3XPZ2
    Conserved Domains (3) summary
    cd09098
    Location:576 → 911
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam02383
    Location:100 → 380
    Syja_N; SacI homology domain
    pfam08952
    Location:910 → 1051
    DUF1866; Domain of unknown function (DUF1866)

  2. XM_013058847.2 → XP_012914301.1  synaptojanin-1 isoform X4

    UniProtKB/TrEMBL
    A0A8U0NW66, M3XPZ2
    Conserved Domains (3) summary
    cd09098
    Location:576 → 911
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam02383
    Location:100 → 380
    Syja_N; SacI homology domain
    pfam08952
    Location:910 → 1051
    DUF1866; Domain of unknown function (DUF1866)

  3. XM_013058850.2 → XP_012914304.1  synaptojanin-1 isoform X7

    UniProtKB/TrEMBL
    A0A8U0TDZ6, M3XPZ2
    Conserved Domains (3) summary
    cd09098
    Location:576 → 911
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam02383
    Location:100 → 380
    Syja_N; SacI homology domain
    pfam08952
    Location:910 → 1051
    DUF1866; Domain of unknown function (DUF1866)

  4. XM_013058849.2 → XP_012914303.1  synaptojanin-1 isoform X6

    UniProtKB/TrEMBL
    A0A8U0NVW0, M3XPZ2
    Conserved Domains (3) summary
    cd09098
    Location:576 → 911
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam02383
    Location:100 → 380
    Syja_N; SacI homology domain
    pfam08952
    Location:910 → 1051
    DUF1866; Domain of unknown function (DUF1866)

  5. XM_013058853.2 → XP_012914307.1  synaptojanin-1 isoform X8

    UniProtKB/TrEMBL
    A0A8U0NVL2, M3XPZ2
    Conserved Domains (3) summary
    cd09098
    Location:576 → 911
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam02383
    Location:100 → 380
    Syja_N; SacI homology domain
    pfam08952
    Location:910 → 1051
    DUF1866; Domain of unknown function (DUF1866)

  6. XM_013058846.2 → XP_012914300.1  synaptojanin-1 isoform X3

    UniProtKB/TrEMBL
    A0A8U0TET3, M3XPZ2
    Conserved Domains (3) summary
    cd09098
    Location:568 → 903
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam02383
    Location:100 → 380
    Syja_N; SacI homology domain
    pfam08952
    Location:902 → 1043
    DUF1866; Domain of unknown function (DUF1866)

  7. XM_013058854.2 → XP_012914308.1  synaptojanin-1 isoform X9

    UniProtKB/TrEMBL
    A0A8U0NU08, M3XPZ2
    Conserved Domains (3) summary
    cd09098
    Location:568 → 903
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam02383
    Location:100 → 380
    Syja_N; SacI homology domain
    pfam08952
    Location:902 → 1043
    DUF1866; Domain of unknown function (DUF1866)

  8. XM_013058845.2 → XP_012914299.1  synaptojanin-1 isoform X2

    UniProtKB/TrEMBL
    A0A8U0NX26, M3XPZ2
    Conserved Domains (3) summary
    cd09098
    Location:573 → 908
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam02383
    Location:100 → 380
    Syja_N; SacI homology domain
    pfam08952
    Location:907 → 1048
    DUF1866; Domain of unknown function (DUF1866)

  9. XM_013058848.2 → XP_012914302.1  synaptojanin-1 isoform X5

    UniProtKB/TrEMBL
    A0A8U0NVX2, M3XPZ2
    Conserved Domains (3) summary
    cd09098
    Location:573 → 908
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam02383
    Location:100 → 380
    Syja_N; SacI homology domain
    pfam08952
    Location:907 → 1048
    DUF1866; Domain of unknown function (DUF1866)

  10. XM_013058857.2 → XP_012914311.1  synaptojanin-1 isoform X10

    UniProtKB/TrEMBL
    A0A8U0NUQ1, M3XPZ2
    Conserved Domains (3) summary
    cd09098
    Location:576 → 911
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam02383
    Location:100 → 380
    Syja_N; SacI homology domain
    pfam08952
    Location:910 → 1051
    DUF1866; Domain of unknown function (DUF1866)

  11. XM_013058858.2 → XP_012914312.1  synaptojanin-1 isoform X11

    UniProtKB/TrEMBL
    A0A8U0TFE6, M3XPZ2
    Conserved Domains (3) summary
    cd09098
    Location:576 → 911
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam02383
    Location:100 → 380
    Syja_N; SacI homology domain
    pfam08952
    Location:910 → 1051
    DUF1866; Domain of unknown function (DUF1866)
Nucleotide Protein
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