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CNGA1 cyclic nucleotide gated channel subunit alpha 1 [ Echinops telfairi (small Madagascar hedgehog) ]

Gene ID: 101663212, updated on 20-Sep-2024

Summary

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Gene symbol
CNGA1
Gene description
cyclic nucleotide gated channel subunit alpha 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Echinops telfairi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Tenrecidae; Tenrecinae; Echinops
Orthologs
human mouse all
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Genomic context

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See CNGA1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
103 current ASM31398v2 (GCF_000313985.2) Unplaced Scaffold NW_022111369.1 (62459540..62494737, complement)
101 previous assembly EchTel2.0 (GCF_000313985.1) Unplaced Scaffold NW_004558723.1 (3335614..3370826, complement)

NW_022111369.1Genomic Context describing neighboring genes Neighboring gene corin, serine peptidase Neighboring gene uncharacterized LOC123520989 Neighboring gene nuclear transcription factor, X-box binding like 1 Neighboring gene mediator of RNA polymerase II transcription subunit 14-like Neighboring gene NIPA like domain containing 1 Neighboring gene TXK tyrosine kinase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cGMP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables intracellularly cAMP-activated cation channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables intracellularly cGMP-activated cation channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein-containing complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in monoatomic cation transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of intracellular cyclic nucleotide activated cation channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cGMP-gated cation channel alpha-1
Names
cyclic nucleotide gated channel alpha 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Echinops telfairi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM31398v2 Primary Assembly

Genomic

  1. NW_022111369.1 Reference ASM31398v2 Primary Assembly

    Range
    62459540..62494737 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004706273.2 → XP_004706330.1  cGMP-gated cation channel alpha-1

    Conserved Domains (3) summary
    cd00038
    Location:470 → 586
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
    pfam00520
    Location:156 → 398
    Ion_trans; Ion transport protein
    pfam16526
    Location:586 → 655
    CLZ; C-terminal leucine zipper domain of cyclic nucleotide-gated channels
Nucleotide Protein
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