U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CACNA1S calcium voltage-gated channel subunit alpha1 S [ Echinops telfairi (small Madagascar hedgehog) ]

Gene ID: 101658956, updated on 20-Sep-2024

Summary

Go to the top of the page Help
Gene symbol
CACNA1S
Gene description
calcium voltage-gated channel subunit alpha1 S
Gene type
protein coding
RefSeq status
MODEL
Organism
Echinops telfairi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Tenrecidae; Tenrecinae; Echinops
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CACNA1S in Genome Data Viewer
Location:
chromosome: Un
Exon count:
42
Annotation release Status Assembly Chr Location
103 current ASM31398v2 (GCF_000313985.2) Unplaced Scaffold NW_022111324.1 (45661708..45750561, complement)
101 previous assembly EchTel2.0 (GCF_000313985.1) Unplaced Scaffold NW_004558707.1 (26595874..26684727, complement)

NW_022111324.1Genomic Context describing neighboring genes Neighboring gene kinesin family member 21B Neighboring gene small nucleolar RNA SNORA32 Neighboring gene achaete-scute family bHLH transcription factor 5 Neighboring gene transmembrane protein 9

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables high voltage-gated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion import across plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of voltage-gated calcium channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
voltage-dependent L-type calcium channel subunit alpha-1S

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Echinops telfairi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM31398v2 Primary Assembly

Genomic

  1. NW_022111324.1 Reference ASM31398v2 Primary Assembly

    Range
    45661708..45750561 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004700078.1 → XP_004700135.1  voltage-dependent L-type calcium channel subunit alpha-1S

    Conserved Domains (4) summary
    pfam00520
    Location:1033 → 1308
    Ion_trans; Ion transport protein
    pfam08763
    Location:1381 → 1452
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16885
    Location:1473 → 1750
    CAC1F_C; Voltage-gated calcium channel subunit alpha, C-term
    pfam16905
    Location:1317 → 1370
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.