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PRICKLE1 prickle planar cell polarity protein 1 [ Echinops telfairi (small Madagascar hedgehog) ]

Gene ID: 101658179, updated on 20-Sep-2024

Summary

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Gene symbol
PRICKLE1
Gene description
prickle planar cell polarity protein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Echinops telfairi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Tenrecidae; Tenrecinae; Echinops
Orthologs
human mouse all
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Genomic context

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See PRICKLE1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
103 current ASM31398v2 (GCF_000313985.2) Unplaced Scaffold NW_022103909.1 (12100816..12119373)
101 previous assembly EchTel2.0 (GCF_000313985.1) Unplaced Scaffold NW_004558754.1 (12106620..12117946)

NW_022103909.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA42/SNORA80 family Neighboring gene U6 spliceosomal RNA Neighboring gene periphilin 1 Neighboring gene gamma-secretase subunit PEN-2-like Neighboring gene leucine zipper transcription factor-like protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prickle-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Echinops telfairi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM31398v2 Primary Assembly

Genomic

  1. NW_022103909.1 Reference ASM31398v2 Primary Assembly

    Range
    12100816..12119373
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045287284.1 → XP_045143219.1  prickle-like protein 1

    Conserved Domains (4) summary
    cd09418
    Location:189 → 244
    LIM2_Prickle; The second LIM domain of Prickle
    cd09420
    Location:249 → 307
    LIM3_Prickle; The third LIM domain of Prickle
    cd09483
    Location:126 → 184
    LIM1_Prickle_1; The first LIM domain of Prickle 1
    cd09827
    Location:22 → 118
    PET_Prickle; The PET domain of Prickle

  2. XM_004711442.2 → XP_004711499.1  prickle-like protein 1

    Conserved Domains (4) summary
    cd09418
    Location:189 → 244
    LIM2_Prickle; The second LIM domain of Prickle
    cd09420
    Location:249 → 307
    LIM3_Prickle; The third LIM domain of Prickle
    cd09483
    Location:126 → 184
    LIM1_Prickle_1; The first LIM domain of Prickle 1
    cd09827
    Location:22 → 118
    PET_Prickle; The PET domain of Prickle
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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