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ATP2B3 ATPase plasma membrane Ca2+ transporting 3 [ Echinops telfairi (small Madagascar hedgehog) ]

Gene ID: 101656980, updated on 20-Sep-2024

Summary

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Gene symbol
ATP2B3
Gene description
ATPase plasma membrane Ca2+ transporting 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Echinops telfairi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Tenrecidae; Tenrecinae; Echinops
Orthologs
human mouse all
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Genomic context

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See ATP2B3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
103 current ASM31398v2 (GCF_000313985.2) Unplaced Scaffold NW_022111376.1 (3019185..3050594, complement)
101 previous assembly EchTel2.0 (GCF_000313985.1) Unplaced Scaffold NW_004558857.1 (1028261..1057865, complement)

NW_022111376.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123521161 Neighboring gene cyclin Q Neighboring gene three prime repair exonuclease 2 Neighboring gene biglycan

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables P-type calcium transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables PDZ domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytosolic calcium ion concentration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plasma membrane calcium-transporting ATPase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Echinops telfairi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM31398v2 Primary Assembly

Genomic

  1. NW_022111376.1 Reference ASM31398v2 Primary Assembly

    Range
    3019185..3050594 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004717580.2 → XP_004717637.1  plasma membrane calcium-transporting ATPase 3 isoform X2

    Conserved Domains (2) summary
    TIGR01517
    Location:19 → 1061
    ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
    pfam12424
    Location:1100 → 1146
    ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal

  2. XM_045285446.1 → XP_045141381.1  plasma membrane calcium-transporting ATPase 3 isoform X1

  3. XM_004717582.2 → XP_004717639.1  plasma membrane calcium-transporting ATPase 3 isoform X3

    Conserved Domains (2) summary
    TIGR01517
    Location:19 → 1061
    ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
    pfam12424
    Location:1100 → 1145
    ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal
Nucleotide Protein
Heading Accession and Version

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