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ATF2 activating transcription factor 2 [ Echinops telfairi (small Madagascar hedgehog) ]

Gene ID: 101656771, updated on 20-Sep-2024

Summary

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Gene symbol
ATF2
Gene description
activating transcription factor 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Echinops telfairi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Tenrecidae; Tenrecinae; Echinops
Orthologs
human mouse all
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Genomic context

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See ATF2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
103 current ASM31398v2 (GCF_000313985.2) Unplaced Scaffold NW_022103899.1 (593880..693836, complement)
101 previous assembly EchTel2.0 (GCF_000313985.1) Unplaced Scaffold NW_004558710.1 (595855..674350, complement)

NW_022103899.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123522235 Neighboring gene small nucleolar RNA SNORA76 Neighboring gene transcription factor Dp-1-like Neighboring gene endoplasmin-like Neighboring gene ATP synthase membrane subunit c locus 3 Neighboring gene small Cajal body-specific RNA 13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cAMP response element binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclic AMP-dependent transcription factor ATF-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Echinops telfairi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM31398v2 Primary Assembly

Genomic

  1. NW_022103899.1 Reference ASM31398v2 Primary Assembly

    Range
    593880..693836 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004701437.2 → XP_004701494.1  cyclic AMP-dependent transcription factor ATF-2 isoform X1

    Conserved Domains (4) summary
    cd12192
    Location:65 → 102
    GCN4_cent; GCN4 central activation domain-like acidic activation domain
    cd14687
    Location:355 → 415
    bZIP_ATF2; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-2 (ATF-2) and similar proteins: a DNA-binding and dimerization domain
    sd00019
    Location:27 → 49
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam05109
    Location:90 → 350
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  2. XM_045294122.1 → XP_045150057.1  cyclic AMP-dependent transcription factor ATF-2 isoform X1

    Conserved Domains (4) summary
    cd12192
    Location:65 → 102
    GCN4_cent; GCN4 central activation domain-like acidic activation domain
    cd14687
    Location:355 → 415
    bZIP_ATF2; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-2 (ATF-2) and similar proteins: a DNA-binding and dimerization domain
    sd00019
    Location:27 → 49
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam05109
    Location:90 → 350
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  3. XM_045294141.1 → XP_045150076.1  cyclic AMP-dependent transcription factor ATF-2 isoform X3

  4. XM_045294127.1 → XP_045150062.1  cyclic AMP-dependent transcription factor ATF-2 isoform X2

    Conserved Domains (4) summary
    cd12192
    Location:47 → 84
    GCN4_cent; GCN4 central activation domain-like acidic activation domain
    cd14687
    Location:337 → 397
    bZIP_ATF2; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-2 (ATF-2) and similar proteins: a DNA-binding and dimerization domain
    sd00019
    Location:9 → 31
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam05109
    Location:72 → 332
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  5. XM_045294134.1 → XP_045150069.1  cyclic AMP-dependent transcription factor ATF-2 isoform X3

Nucleotide Protein
Heading Accession and Version

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