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TP53 tumor protein p53 [ Echinops telfairi (small Madagascar hedgehog) ]

Gene ID: 101656530, updated on 20-Sep-2024

Summary

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Gene symbol
TP53
Gene description
tumor protein p53
Gene type
protein coding
RefSeq status
MODEL
Organism
Echinops telfairi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Tenrecidae; Tenrecinae; Echinops
Orthologs
human mouse all
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Genomic context

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See TP53 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
103 current ASM31398v2 (GCF_000313985.2) Unplaced Scaffold NW_022105908.1 (19846325..19866927)
101 previous assembly EchTel2.0 (GCF_000313985.1) Unplaced Scaffold NW_004558770.1 (1322467..1327483, complement)

NW_022105908.1Genomic Context describing neighboring genes Neighboring gene ephrin B3 Neighboring gene WD repeat containing antisense to TP53 Neighboring gene ATPase Na+/K+ transporting subunit beta 2 Neighboring gene small nuclear ribonucleoprotein G-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein tetramerization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellular tumor antigen p53

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Echinops telfairi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM31398v2 Primary Assembly

Genomic

  1. NW_022105908.1 Reference ASM31398v2 Primary Assembly

    Range
    19846325..19866927
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013007322.3 → XP_012862776.1  cellular tumor antigen p53

    Conserved Domains (3) summary
    cd08367
    Location:93 → 274
    P53; P53 DNA-binding domain
    pfam07710
    Location:304 → 340
    P53_tetramer; P53 tetramerisation motif
    pfam08563
    Location:6 → 29
    P53_TAD; P53 transactivation motif
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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