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SPTSSB serine palmitoyltransferase small subunit B [ Echinops telfairi (small Madagascar hedgehog) ]

Gene ID: 101655232, updated on 20-Sep-2024

Summary

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Gene symbol
SPTSSB
Gene description
serine palmitoyltransferase small subunit B
Gene type
protein coding
RefSeq status
MODEL
Organism
Echinops telfairi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Tenrecidae; Tenrecinae; Echinops
Orthologs
human mouse all
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Genomic context

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See SPTSSB in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
103 current ASM31398v2 (GCF_000313985.2) Unplaced Scaffold NW_022111320.1 (7274952..7332978, complement)
101 previous assembly EchTel2.0 (GCF_000313985.1) Unplaced Scaffold NW_004558718.1 (43181486..43181736)

NW_022111320.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S27-like Neighboring gene NMD3 ribosome export adaptor Neighboring gene ribosomal protein L18-like Neighboring gene otolin 1 Neighboring gene GPN-loop GTPase 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of serine palmitoyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine palmitoyltransferase small subunit B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Echinops telfairi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM31398v2 Primary Assembly

Genomic

  1. NW_022111320.1 Reference ASM31398v2 Primary Assembly

    Range
    7274952..7332978 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045297616.1 → XP_045153551.1  serine palmitoyltransferase small subunit B

    Conserved Domains (1) summary
    pfam11779
    Location:7 → 60
    SPT_ssu-like; Small subunit of serine palmitoyltransferase-like
Nucleotide Protein
Heading Accession and Version

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