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LOC101653570 caspase-1 [ Echinops telfairi (small Madagascar hedgehog) ]

Gene ID: 101653570, updated on 20-Sep-2024

Summary

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Gene symbol
LOC101653570
Gene description
caspase-1
Gene type
protein coding
RefSeq status
MODEL
Organism
Echinops telfairi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Tenrecidae; Tenrecinae; Echinops
Also known as
CASP1
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Genomic context

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See LOC101653570 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
103 current ASM31398v2 (GCF_000313985.2) Unplaced Scaffold NW_022111321.1 (14258599..14273357, complement)
101 previous assembly EchTel2.0 (GCF_000313985.1) Unplaced Scaffold NW_004558736.1 (7375685..7388493)

NW_022111321.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S4, X isoform-like Neighboring gene caspase-4 Neighboring gene dynactin subunit 6-like Neighboring gene glutamate ionotropic receptor AMPA type subunit 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables caspase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of protein-containing complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
caspase-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Echinops telfairi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM31398v2 Primary Assembly

Genomic

  1. NW_022111321.1 Reference ASM31398v2 Primary Assembly

    Range
    14258599..14273357 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045297784.1 → XP_045153719.1  caspase-1

  2. XM_045297783.1 → XP_045153718.1  caspase-1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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