U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

HCFC1 host cell factor C1 [ Echinops telfairi (small Madagascar hedgehog) ]

Gene ID: 101652914, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
HCFC1
Gene description
host cell factor C1
Gene type
protein coding
RefSeq status
MODEL
Organism
Echinops telfairi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Tenrecidae; Tenrecinae; Echinops
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See HCFC1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
103 current ASM31398v2 (GCF_000313985.2) Unplaced Scaffold NW_022111376.1 (2693914..2711367)
101 previous assembly EchTel2.0 (GCF_000313985.1) Unplaced Scaffold NW_004558857.1 (701091..717440)

NW_022111376.1Genomic Context describing neighboring genes Neighboring gene sorbitol dehydrogenase-like Neighboring gene transmembrane protein 187 Neighboring gene renin binding protein Neighboring gene N-alpha-acetyltransferase 10, NatA catalytic subunit Neighboring gene Rho GTPase activating protein 4

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
host cell factor 1
Names
host cell factor C1 (VP16-accessory protein)

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Echinops telfairi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM31398v2 Primary Assembly

Genomic

  1. NW_022111376.1 Reference ASM31398v2 Primary Assembly

    Range
    2693914..2711367
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045285460.1 → XP_045141395.1  host cell factor 1 isoform X1

  2. XM_004717565.2 → XP_004717622.1  host cell factor 1 isoform X5

    Conserved Domains (3) summary
    PLN02193
    Location:27 → 322
    PLN02193; nitrile-specifier protein
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam13854
    Location:319 → 351
    Kelch_5; Kelch motif

  3. XM_045285461.1 → XP_045141396.1  host cell factor 1 isoform X2

  4. XM_045285462.1 → XP_045141397.1  host cell factor 1 isoform X3

  5. XM_045285463.1 → XP_045141398.1  host cell factor 1 isoform X4

  6. XM_045285464.1 → XP_045141399.1  host cell factor 1 isoform X6

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.