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DDIT3 DNA damage inducible transcript 3 [ Echinops telfairi (small Madagascar hedgehog) ]

Gene ID: 101652164, updated on 20-Sep-2024

Summary

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Gene symbol
DDIT3
Gene description
DNA damage inducible transcript 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Echinops telfairi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Tenrecidae; Tenrecinae; Echinops
Orthologs
human mouse all
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Genomic context

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See DDIT3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
103 current ASM31398v2 (GCF_000313985.2) Unplaced Scaffold NW_022103898.1 (75889340..75893692)
101 previous assembly EchTel2.0 (GCF_000313985.1) Unplaced Scaffold NW_004558708.1 (75889334..75893525)

NW_022103898.1Genomic Context describing neighboring genes Neighboring gene dynactin subunit 2 Neighboring gene methyl-CpG binding domain protein 6 Neighboring gene methionyl-tRNA synthetase 1 Neighboring gene Rho GTPase activating protein 9 Neighboring gene GLI family zinc finger 1 Neighboring gene inhibin subunit beta E

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ER overload response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of CREB transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of intrinsic apoptotic signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CHOP-ATF3 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of CHOP-ATF4 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of CHOP-C/EBP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA damage-inducible transcript 3 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Echinops telfairi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM31398v2 Primary Assembly

Genomic

  1. NW_022103898.1 Reference ASM31398v2 Primary Assembly

    Range
    75889340..75893692
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004700521.2 → XP_004700578.1  DNA damage-inducible transcript 3 protein

    Conserved Domains (2) summary
    smart00338
    Location:96 → 160
    BRLZ; basic region leucin zipper
    cd14686
    Location:98 → 158
    bZIP; coiled coil [structural motif]
Nucleotide Protein
Heading Accession and Version

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