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MYC MYC proto-oncogene, bHLH transcription factor [ Echinops telfairi (small Madagascar hedgehog) ]

Gene ID: 101649029, updated on 20-Sep-2024

Summary

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Gene symbol
MYC
Gene description
MYC proto-oncogene, bHLH transcription factor
Gene type
protein coding
RefSeq status
MODEL
Organism
Echinops telfairi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Tenrecidae; Tenrecinae; Echinops
Orthologs
human mouse all
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Genomic context

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See MYC in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
103 current ASM31398v2 (GCF_000313985.2) Unplaced Scaffold NW_022103896.1 (12446086..12451008, complement)
101 previous assembly EchTel2.0 (GCF_000313985.1) Unplaced Scaffold NW_004558703.1 (12446575..12450581, complement)

NW_022103896.1Genomic Context describing neighboring genes Neighboring gene U1 spliceosomal RNA Neighboring gene uncharacterized LOC123521369 Neighboring gene 40S ribosomal protein S9-like Neighboring gene 60S ribosomal protein L8-like Neighboring gene 40S ribosomal protein S6-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of cell population proliferation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
myc proto-oncogene protein
Names
v-myc avian myelocytomatosis viral oncogene homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Echinops telfairi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM31398v2 Primary Assembly

Genomic

  1. NW_022103896.1 Reference ASM31398v2 Primary Assembly

    Range
    12446086..12451008 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004697650.3 → XP_004697707.1  myc proto-oncogene protein isoform X3

    Conserved Domains (2) summary
    cd11458
    Location:349 → 432
    bHLHzip_c-Myc; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in c-Myc and similar proteins
    pfam01056
    Location:6 → 343
    Myc_N; Myc amino-terminal region

  2. XM_045286046.1 → XP_045141981.1  myc proto-oncogene protein isoform X3

    Conserved Domains (2) summary
    cd11458
    Location:349 → 432
    bHLHzip_c-Myc; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in c-Myc and similar proteins
    pfam01056
    Location:6 → 343
    Myc_N; Myc amino-terminal region

  3. XM_045286037.1 → XP_045141972.1  myc proto-oncogene protein isoform X1

  4. XM_045286040.1 → XP_045141975.1  myc proto-oncogene protein isoform X2

Nucleotide Protein
Heading Accession and Version

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