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TBL1X transducin beta like 1 X-linked [ Echinops telfairi (small Madagascar hedgehog) ]

Gene ID: 101648026, updated on 20-Sep-2024

Summary

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Gene symbol
TBL1X
Gene description
transducin beta like 1 X-linked
Gene type
protein coding
RefSeq status
MODEL
Organism
Echinops telfairi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Tenrecidae; Tenrecinae; Echinops
Orthologs
human all
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Genomic context

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See TBL1X in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
103 current ASM31398v2 (GCF_000313985.2) Unplaced Scaffold NW_022103951.1 (19259601..19336318, complement)
101 previous assembly EchTel2.0 (GCF_000313985.1) Unplaced Scaffold NW_004558880.1 (320461..341611, complement)

NW_022103951.1Genomic Context describing neighboring genes Neighboring gene putative PRAME family member 26 Neighboring gene melanoma antigen preferentially expressed in tumors-like Neighboring gene melanoma antigen preferentially expressed in tumors-like Neighboring gene uncharacterized LOC123521731

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
F-box-like/WD repeat-containing protein TBL1X
Names
transducin beta like 1X-linked

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Echinops telfairi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM31398v2 Primary Assembly

Genomic

  1. NW_022103951.1 Reference ASM31398v2 Primary Assembly

    Range
    19259601..19336318 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045290780.1 → XP_045146715.1  F-box-like/WD repeat-containing protein TBL1X

    Conserved Domains (3) summary
    cd00200
    Location:168 → 474
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:176 → 223
    7WD40; WD40 repeat [structural motif]
    pfam08513
    Location:7 → 31
    LisH

  2. XM_004717771.2 → XP_004717828.1  F-box-like/WD repeat-containing protein TBL1X

    Conserved Domains (3) summary
    cd00200
    Location:168 → 474
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:176 → 223
    7WD40; WD40 repeat [structural motif]
    pfam08513
    Location:7 → 31
    LisH
Nucleotide Protein
Heading Accession and Version

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