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PLN phospholamban [ Echinops telfairi (small Madagascar hedgehog) ]

Gene ID: 101644023, updated on 20-Sep-2024

Summary

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Gene symbol
PLN
Gene description
phospholamban
Gene type
protein coding
RefSeq status
MODEL
Organism
Echinops telfairi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Tenrecidae; Tenrecinae; Echinops
Orthologs
human mouse all
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Genomic context

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See PLN in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
103 current ASM31398v2 (GCF_000313985.2) Unplaced Scaffold NW_022107431.1 (49900340..49914483)
101 previous assembly EchTel2.0 (GCF_000313985.1) Unplaced Scaffold NW_004558711.1 (49899515..49899673)

NW_022107431.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA4 Neighboring gene solute carrier family 35 member F1 Neighboring gene centrosomal protein 85 like Neighboring gene prohibitin-2-like Neighboring gene minichromosome maintenance 9 homologous recombination repair factor Neighboring gene anti-silencing function 1A histone chaperone

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of ATPase-coupled calcium transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of calcium ion import into sarcoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of heart rate IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cardiac phospholamban

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Echinops telfairi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM31398v2 Primary Assembly

Genomic

  1. NW_022107431.1 Reference ASM31398v2 Primary Assembly

    Range
    49900340..49914483
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045294564.1 → XP_045150499.1  cardiac phospholamban

    Conserved Domains (1) summary
    TIGR01294
    Location:1 → 52
    P_lamban; phospholamban
Nucleotide Protein
Heading Accession and Version

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