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ABCA1 ATP binding cassette subfamily A member 1 [ Echinops telfairi (small Madagascar hedgehog) ]

Gene ID: 101643958, updated on 20-Sep-2024

Summary

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Gene symbol
ABCA1
Gene description
ATP binding cassette subfamily A member 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Echinops telfairi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Tenrecidae; Tenrecinae; Echinops
Orthologs
human mouse all
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Genomic context

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See ABCA1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
50
Annotation release Status Assembly Chr Location
103 current ASM31398v2 (GCF_000313985.2) Unplaced Scaffold NW_022111310.1 (8666414..8794581, complement)
101 previous assembly EchTel2.0 (GCF_000313985.1) Unplaced Scaffold NW_004558749.1 (7728532..7832809)

NW_022111310.1Genomic Context describing neighboring genes Neighboring gene olfactory receptor 13D1-like Neighboring gene nipsnap homolog 3A Neighboring gene GTP-binding nuclear protein Ran-like Neighboring gene heat shock protein HSP 90-alpha-like Neighboring gene solute carrier family 44 member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipid transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phospholipid-transporting ATPase ABCA1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Echinops telfairi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM31398v2 Primary Assembly

Genomic

  1. NW_022111310.1 Reference ASM31398v2 Primary Assembly

    Range
    8666414..8794581 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004710968.3 → XP_004711025.1  phospholipid-transporting ATPase ABCA1

    Conserved Domains (1) summary
    TIGR01257
    Location:1 → 2236
    rim_protein; retinal-specific rim ABC transporter
Nucleotide Protein
Heading Accession and Version

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