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PRICKLE2 prickle planar cell polarity protein 2 [ Echinops telfairi (small Madagascar hedgehog) ]

Gene ID: 101640885, updated on 20-Sep-2024

Summary

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Gene symbol
PRICKLE2
Gene description
prickle planar cell polarity protein 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Echinops telfairi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Tenrecidae; Tenrecinae; Echinops
Orthologs
human mouse all
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Genomic context

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See PRICKLE2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
103 current ASM31398v2 (GCF_000313985.2) Unplaced Scaffold NW_022103928.1 (16496536..16677537)
101 previous assembly EchTel2.0 (GCF_000313985.1) Unplaced Scaffold NW_004558712.1 (48023543..48122333, complement)

NW_022103928.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123521645 Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 9 Neighboring gene U1 spliceosomal RNA Neighboring gene 60S ribosomal protein L17-like Neighboring gene proteasome 26S subunit, non-ATPase 6 Neighboring gene methionine-R-sulfoxide reductase B1-like Neighboring gene ataxin 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prickle-like protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Echinops telfairi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM31398v2 Primary Assembly

Genomic

  1. NW_022103928.1 Reference ASM31398v2 Primary Assembly

    Range
    16496536..16677537
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045289881.1 → XP_045145816.1  prickle-like protein 2

    Conserved Domains (4) summary
    cd09415
    Location:130 → 188
    LIM1_Prickle; The first LIM domain of Prickle
    cd09418
    Location:193 → 248
    LIM2_Prickle; The second LIM domain of Prickle
    cd09420
    Location:253 → 311
    LIM3_Prickle; The third LIM domain of Prickle
    cd09827
    Location:26 → 122
    PET_Prickle; The PET domain of Prickle

  2. XM_004702414.2 → XP_004702471.1  prickle-like protein 2

    Conserved Domains (4) summary
    cd09415
    Location:130 → 188
    LIM1_Prickle; The first LIM domain of Prickle
    cd09418
    Location:193 → 248
    LIM2_Prickle; The second LIM domain of Prickle
    cd09420
    Location:253 → 311
    LIM3_Prickle; The third LIM domain of Prickle
    cd09827
    Location:26 → 122
    PET_Prickle; The PET domain of Prickle
Nucleotide Protein
Heading Accession and Version

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