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ATP2B4 ATPase plasma membrane Ca2+ transporting 4 [ Echinops telfairi (small Madagascar hedgehog) ]

Gene ID: 101640649, updated on 20-Sep-2024

Summary

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Gene symbol
ATP2B4
Gene description
ATPase plasma membrane Ca2+ transporting 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Echinops telfairi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Tenrecidae; Tenrecinae; Echinops
Orthologs
human mouse all
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Genomic context

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See ATP2B4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
103 current ASM31398v2 (GCF_000313985.2) Unplaced Scaffold NW_022111324.1 (48659717..48775049)
101 previous assembly EchTel2.0 (GCF_000313985.1) Unplaced Scaffold NW_004558707.1 (29656198..29706945)

NW_022111324.1Genomic Context describing neighboring genes Neighboring gene fibromodulin Neighboring gene proline and arginine rich end leucine rich repeat protein Neighboring gene lymphocyte transmembrane adaptor 1 Neighboring gene zinc finger CCCH-type containing 11A Neighboring gene zinc finger BED-type containing 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables P-type calcium transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables PDZ domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytosolic calcium ion concentration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plasma membrane calcium-transporting ATPase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Echinops telfairi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM31398v2 Primary Assembly

Genomic

  1. NW_022111324.1 Reference ASM31398v2 Primary Assembly

    Range
    48659717..48775049
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030887808.2 → XP_030743668.1  plasma membrane calcium-transporting ATPase 4

    Conserved Domains (3) summary
    cd02081
    Location:73 → 918
    P-type_ATPase_Ca_PMCA-like; animal plasma membrane Ca2(+)-ATPases (PMCA), similar to human ATP2B1-4/PMCA1-4, and related Ca2(+)-ATPases including Saccharomyces cerevisiae vacuolar PMC1
    pfam12424
    Location:1048 → 1131
    ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal
    pfam00689
    Location:870 → 1005
    Cation_ATPase_C; Cation transporting ATPase, C-terminus
Nucleotide Protein
Heading Accession and Version

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