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Pnkd PNKD metallo-beta-lactamase domain containing [ Jaculus jaculus (lesser Egyptian jerboa) ]

Gene ID: 101614117, updated on 8-Mar-2024

Summary

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Gene symbol
Pnkd
Gene description
PNKD metallo-beta-lactamase domain containing
See related
EnsemblRapid:ENSJJAG00000023559
Gene type
protein coding
RefSeq status
MODEL
Organism
Jaculus jaculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Dipodoidea; Dipodidae; Dipodinae; Jaculus
Orthologs
human mouse all
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Genomic context

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See Pnkd in Genome Data Viewer
Location:
chromosome: 4
Exon count:
14
Annotation release Status Assembly Chr Location
102 current mJacJac1.mat.Y.cur (GCF_020740685.1) 4 NC_059105.1 (14799741..14892268, complement)
101 previous assembly JacJac1.0 (GCF_000280705.1) Unplaced Scaffold NW_004504367.1 (11964330..12052761, complement)

Chromosome 4 - NC_059105.1Genomic Context describing neighboring genes Neighboring gene cell division cycle-associated protein 3-like Neighboring gene ciliogenesis associated TTC17 interacting protein Neighboring gene transmembrane BAX inhibitor motif containing 1 Neighboring gene angio associated migratory cell protein Neighboring gene G protein-coupled bile acid receptor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydroxyacylglutathione hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable hydrolase PNKD
Names
PNKD, MBL domain containing
paroxysmal nonkinesigenic dyskinesia

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Jaculus jaculus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mJacJac1.mat.Y.cur Primary Assembly

Genomic

  1. NC_059105.1 Reference mJacJac1.mat.Y.cur Primary Assembly

    Range
    14799741..14892268 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004662936.2 → XP_004662993.1  probable hydrolase PNKD isoform X1

    UniProtKB/TrEMBL
    A0A8C5LED2, A0A8C5LJP4
    Related
    ENSJJAP00000023941.1, ENSJJAT00000030519.2
    Conserved Domains (3) summary
    TIGR03413
    Location:121 → 379
    GSH_gloB; hydroxyacylglutathione hydrolase
    pfam16123
    Location:292 → 379
    HAGH_C; Hydroxyacylglutathione hydrolase C-terminus
    cd07723
    Location:123 → 291
    hydroxyacylglutathione_hydrolase_MBL-fold; hydroxyacylglutathione hydrolase, MBL-fold metallo-hydrolase domain

  2. XM_045146838.1 → XP_045002773.1  probable hydrolase PNKD isoform X2

    Related
    ENSJJAP00000030051.1, ENSJJAT00000034176.1

  3. XM_045146840.1 → XP_045002775.1  probable hydrolase PNKD isoform X4

  4. XM_045146839.1 → XP_045002774.1  probable hydrolase PNKD isoform X3

  5. XM_045146841.1 → XP_045002776.1  probable hydrolase PNKD isoform X5

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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