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Cpsf2 cleavage and polyadenylation specific factor 2 [ Jaculus jaculus (lesser Egyptian jerboa) ]

Gene ID: 101612700, updated on 11-Apr-2024

Summary

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Gene symbol
Cpsf2
Gene description
cleavage and polyadenylation specific factor 2
See related
EnsemblRapid:ENSJJAG00000017925
Gene type
protein coding
RefSeq status
MODEL
Organism
Jaculus jaculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Dipodoidea; Dipodidae; Dipodinae; Jaculus
Orthologs
human mouse all
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Genomic context

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See Cpsf2 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
18
Annotation release Status Assembly Chr Location
102 current mJacJac1.mat.Y.cur (GCF_020740685.1) 7 NC_059108.1 (127433642..127473448, complement)
101 previous assembly JacJac1.0 (GCF_000280705.1) Unplaced Scaffold NW_004504313.1 (41985822..42015715, complement)

Chromosome 7 - NC_059108.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 24 member 4 Neighboring gene ferritin light chain-like Neighboring gene NADH:ubiquinone oxidoreductase subunit B1 Neighboring gene ataxin 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA 3'-end processing by stem-loop binding and cleavage IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mRNA cleavage and polyadenylation specificity factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cleavage and polyadenylation specificity factor subunit 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Jaculus jaculus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mJacJac1.mat.Y.cur Primary Assembly

Genomic

  1. NC_059108.1 Reference mJacJac1.mat.Y.cur Primary Assembly

    Range
    127433642..127473448 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045154582.1 → XP_045010517.1  cleavage and polyadenylation specificity factor subunit 2

    UniProtKB/TrEMBL
    A0A8C5KZ15
    Conserved Domains (4) summary
    smart01027
    Location:243 → 368
    Beta-Casp; Beta-Casp domain
    cd16293
    Location:7 → 204
    CPSF2-like_MBL-fold; cleavage and polyadenylation specificity factor (CPSF) subunit 2 and related proteins; MBL-fold metallo-hydrolase domain
    pfam07521
    Location:529 → 591
    RMMBL; Zn-dependent metallo-hydrolase RNA specificity domain
    pfam13299
    Location:608 → 779
    CPSF100_C; Cleavage and polyadenylation factor 2 C-terminal

  2. XM_004649329.2 → XP_004649386.1  cleavage and polyadenylation specificity factor subunit 2

    UniProtKB/TrEMBL
    A0A8C5KZ15
    Conserved Domains (4) summary
    smart01027
    Location:243 → 368
    Beta-Casp; Beta-Casp domain
    cd16293
    Location:7 → 204
    CPSF2-like_MBL-fold; cleavage and polyadenylation specificity factor (CPSF) subunit 2 and related proteins; MBL-fold metallo-hydrolase domain
    pfam07521
    Location:529 → 591
    RMMBL; Zn-dependent metallo-hydrolase RNA specificity domain
    pfam13299
    Location:608 → 779
    CPSF100_C; Cleavage and polyadenylation factor 2 C-terminal

  3. XM_045154583.1 → XP_045010518.1  cleavage and polyadenylation specificity factor subunit 2

    UniProtKB/TrEMBL
    A0A8C5KZ15
    Conserved Domains (4) summary
    smart01027
    Location:243 → 368
    Beta-Casp; Beta-Casp domain
    cd16293
    Location:7 → 204
    CPSF2-like_MBL-fold; cleavage and polyadenylation specificity factor (CPSF) subunit 2 and related proteins; MBL-fold metallo-hydrolase domain
    pfam07521
    Location:529 → 591
    RMMBL; Zn-dependent metallo-hydrolase RNA specificity domain
    pfam13299
    Location:608 → 779
    CPSF100_C; Cleavage and polyadenylation factor 2 C-terminal

  4. XM_045154580.1 → XP_045010515.1  cleavage and polyadenylation specificity factor subunit 2

    UniProtKB/TrEMBL
    A0A8C5KZ15
    Related
    ENSJJAP00000015893.1, ENSJJAT00000022401.2
    Conserved Domains (4) summary
    smart01027
    Location:243 → 368
    Beta-Casp; Beta-Casp domain
    cd16293
    Location:7 → 204
    CPSF2-like_MBL-fold; cleavage and polyadenylation specificity factor (CPSF) subunit 2 and related proteins; MBL-fold metallo-hydrolase domain
    pfam07521
    Location:529 → 591
    RMMBL; Zn-dependent metallo-hydrolase RNA specificity domain
    pfam13299
    Location:608 → 779
    CPSF100_C; Cleavage and polyadenylation factor 2 C-terminal
Nucleotide Protein
Heading Accession and Version

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