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Ascc1 activating signal cointegrator 1 complex subunit 1 [ Jaculus jaculus (lesser Egyptian jerboa) ]

Gene ID: 101610427, updated on 11-Apr-2024

Summary

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Gene symbol
Ascc1
Gene description
activating signal cointegrator 1 complex subunit 1
See related
EnsemblRapid:ENSJJAG00000009829
Gene type
protein coding
RefSeq status
MODEL
Organism
Jaculus jaculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Dipodoidea; Dipodidae; Dipodinae; Jaculus
Orthologs
human mouse all
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Genomic context

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See Ascc1 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
12
Annotation release Status Assembly Chr Location
102 current mJacJac1.mat.Y.cur (GCF_020740685.1) 18 NC_059119.1 (13429983..13519886, complement)
101 previous assembly JacJac1.0 (GCF_000280705.1) Unplaced Scaffold NW_004504336.1 (13460957..13539658, complement)

Chromosome 18 - NC_059119.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 1 Neighboring gene RNA-binding motif protein, X-linked 2-like Neighboring gene SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 Neighboring gene anaphase promoting complex subunit 16 Neighboring gene DNA damage inducible transcript 4 Neighboring gene U6 spliceosomal RNA Neighboring gene DnaJ heat shock protein family (Hsp40) member B12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA alkylation repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
activating signal cointegrator 1 complex subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Jaculus jaculus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mJacJac1.mat.Y.cur Primary Assembly

Genomic

  1. NC_059119.1 Reference mJacJac1.mat.Y.cur Primary Assembly

    Range
    13429983..13519886 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045137817.1 → XP_044993752.1  activating signal cointegrator 1 complex subunit 1

    UniProtKB/TrEMBL
    A0A8C5K7Y2
    Related
    ENSJJAP00000004835.1, ENSJJAT00000011089.2
    Conserved Domains (2) summary
    pfam10469
    Location:132 → 355
    AKAP7_NLS; AKAP7 2'5' RNA ligase-like domain
    cd22419
    Location:58 → 123
    KH-I_ASCC1; type I K homology (KH) RNA-binding domain found in activating signal cointegrator 1 complex subunit 1 (ASCC1) and similar proteins

  2. XM_045137815.1 → XP_044993750.1  activating signal cointegrator 1 complex subunit 1

    UniProtKB/TrEMBL
    A0A8C5K7Y2
    Conserved Domains (2) summary
    pfam10469
    Location:132 → 355
    AKAP7_NLS; AKAP7 2'5' RNA ligase-like domain
    cd22419
    Location:58 → 123
    KH-I_ASCC1; type I K homology (KH) RNA-binding domain found in activating signal cointegrator 1 complex subunit 1 (ASCC1) and similar proteins

  3. XM_004657898.2 → XP_004657955.1  activating signal cointegrator 1 complex subunit 1

    UniProtKB/TrEMBL
    A0A8C5K7Y2
    Conserved Domains (2) summary
    pfam10469
    Location:132 → 355
    AKAP7_NLS; AKAP7 2'5' RNA ligase-like domain
    cd22419
    Location:58 → 123
    KH-I_ASCC1; type I K homology (KH) RNA-binding domain found in activating signal cointegrator 1 complex subunit 1 (ASCC1) and similar proteins

  4. XM_045137816.1 → XP_044993751.1  activating signal cointegrator 1 complex subunit 1

    UniProtKB/TrEMBL
    A0A8C5K7Y2
    Conserved Domains (2) summary
    pfam10469
    Location:132 → 355
    AKAP7_NLS; AKAP7 2'5' RNA ligase-like domain
    cd22419
    Location:58 → 123
    KH-I_ASCC1; type I K homology (KH) RNA-binding domain found in activating signal cointegrator 1 complex subunit 1 (ASCC1) and similar proteins
Nucleotide Protein
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