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Trub1 TruB pseudouridine synthase family member 1 [ Jaculus jaculus (lesser Egyptian jerboa) ]

Gene ID: 101605327, updated on 8-Mar-2024

Summary

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Gene symbol
Trub1
Gene description
TruB pseudouridine synthase family member 1
See related
EnsemblRapid:ENSJJAG00000011800
Gene type
protein coding
RefSeq status
MODEL
Organism
Jaculus jaculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Dipodoidea; Dipodidae; Dipodinae; Jaculus
Orthologs
human mouse all
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Genomic context

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See Trub1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
102 current mJacJac1.mat.Y.cur (GCF_020740685.1) 1 NC_059102.1 (19187658..19240866, complement)
101 previous assembly JacJac1.0 (GCF_000280705.1) Unplaced Scaffold NW_004504342.1 (13321460..13373732, complement)

Chromosome 1 - NC_059102.1Genomic Context describing neighboring genes Neighboring gene GDNF family receptor alpha 1 Neighboring gene attractin like 1 Neighboring gene non-POU domain-containing octamer-binding protein-like Neighboring gene coatomer subunit delta-like Neighboring gene phosphatidylinositol-glycan biosynthesis class X protein-like Neighboring gene 40S ribosomal protein S12-like Neighboring gene FHF complex subunit HOOK interacting protein 2A Neighboring gene actin binding LIM protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pseudouridine synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tRNA modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable tRNA pseudouridine synthase 1
Names
TruB pseudouridine (psi) synthase homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Jaculus jaculus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mJacJac1.mat.Y.cur Primary Assembly

Genomic

  1. NC_059102.1 Reference mJacJac1.mat.Y.cur Primary Assembly

    Range
    19187658..19240866 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004659314.2 → XP_004659371.1  probable tRNA pseudouridine synthase 1

    UniProtKB/TrEMBL
    A0A8C5KE18
    Related
    ENSJJAP00000007380.2, ENSJJAT00000013791.2
    Conserved Domains (2) summary
    TIGR00431
    Location:67 → 284
    TruB; tRNA pseudouridine(55) synthase
    cd02867
    Location:67 → 322
    PseudoU_synth_TruB_4; Pseudouridine synthase homolog 4
Nucleotide Protein
Heading Accession and Version

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