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Emg1 EMG1 N1-specific pseudouridine methyltransferase [ Jaculus jaculus (lesser Egyptian jerboa) ]

Gene ID: 101599997, updated on 8-Mar-2024

Summary

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Gene symbol
Emg1
Gene description
EMG1 N1-specific pseudouridine methyltransferase
See related
EnsemblRapid:ENSJJAG00000018448
Gene type
protein coding
RefSeq status
MODEL
Organism
Jaculus jaculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Dipodoidea; Dipodidae; Dipodinae; Jaculus
Orthologs
human mouse all
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Genomic context

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See Emg1 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
6
Annotation release Status Assembly Chr Location
102 current mJacJac1.mat.Y.cur (GCF_020740685.1) 23 NC_059124.1 (9833162..9843259)
101 previous assembly JacJac1.0 (GCF_000280705.1) Unplaced Scaffold NW_004504430.1 (1057231..1067118, complement)

Chromosome 23 - NC_059124.1Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase non-receptor type 6 Neighboring gene small nucleolar RNA U89 Neighboring gene prohibitin 2 Neighboring gene lysophosphatidylcholine acyltransferase 3 Neighboring gene protein LSM14 homolog A-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables rRNA (pseudouridine) methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables rRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in rRNA base methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ribosomal RNA small subunit methyltransferase NEP1
Names
EMG1 nucleolar protein homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Jaculus jaculus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mJacJac1.mat.Y.cur Primary Assembly

Genomic

  1. NC_059124.1 Reference mJacJac1.mat.Y.cur Primary Assembly

    Range
    9833162..9843259
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004668656.3 → XP_004668713.1  ribosomal RNA small subunit methyltransferase NEP1

    UniProtKB/TrEMBL
    A0A8C5L148
    Related
    ENSJJAP00000016670.1, ENSJJAT00000023183.2
    Conserved Domains (1) summary
    pfam03587
    Location:47 → 239
    EMG1; EMG1/NEP1 methyltransferase
Nucleotide Protein
Heading Accession and Version

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