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Polr2b RNA polymerase II subunit B [ Octodon degus (degu) ]

Gene ID: 101591602, updated on 8-Mar-2024

Summary

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Gene symbol
Polr2b
Gene description
RNA polymerase II subunit B
See related
Ensembl:ENSODEG00000009625
Gene type
protein coding
RefSeq status
MODEL
Organism
Octodon degus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Octodontidae; Octodon
Orthologs
human mouse all
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Genomic context

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See Polr2b in Genome Data Viewer
Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
102 current OctDeg1.0 (GCF_000260255.1) Unplaced Scaffold NW_004524595.1 (23004964..23050235)

NW_004524595.1Genomic Context describing neighboring genes Neighboring gene 5S ribosomal RNA Neighboring gene nitric oxide associated 1 Neighboring gene insulin like growth factor binding protein 7 Neighboring gene dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4-like Neighboring gene short transmembrane mitochondrial protein 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004524595 Unplaced Scaffold Reference OctDeg1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribonucleoside binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase II subunit RPB2
Names
polymerase (RNA) II (DNA directed) polypeptide B, 140kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Octodon degus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OctDeg1.0 Primary Assembly

Genomic

  1. NW_004524595.1 Reference OctDeg1.0 Primary Assembly

    Range
    23004964..23050235
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004627529.2 → XP_004627586.1  DNA-directed RNA polymerase II subunit RPB2

    See identical proteins and their annotated locations for XP_004627586.1

    UniProtKB/TrEMBL
    A0A6P3F097
    Related
    ENSODEP00000012995.1, ENSODET00000013166.1
    Conserved Domains (1) summary
    PRK08565
    Location:27 → 1172
    PRK08565; DNA-directed RNA polymerase subunit B; Provisional
Nucleotide Protein
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Gene LinkOut

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