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LOC101585542 40S ribosomal protein S15a [ Octodon degus (degu) ]

Gene ID: 101585542, updated on 22-Oct-2023

Summary

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Gene symbol
LOC101585542
Gene description
40S ribosomal protein S15a
See related
Ensembl:ENSODEG00000019379
Gene type
protein coding
RefSeq status
MODEL
Organism
Octodon degus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Octodontidae; Octodon
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Genomic context

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See LOC101585542 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
102 current OctDeg1.0 (GCF_000260255.1) Unplaced Scaffold NW_004524598.1 (9359127..9359580, complement)

NW_004524598.1Genomic Context describing neighboring genes Neighboring gene thymosin beta-10 pseudogene Neighboring gene proline rich nuclear receptor coactivator 1 Neighboring gene tropomyosin alpha-3 chain pseudogene Neighboring gene RNA guanylyltransferase and 5'-phosphatase Neighboring gene guanine nucleotide-binding protein G(s) subunit alpha Neighboring gene nuclear autoantigenic sperm protein-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004524598 Unplaced Scaffold Reference OctDeg1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
40S ribosomal protein S15a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Octodon degus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OctDeg1.0 Primary Assembly

Genomic

  1. NW_004524598.1 Reference OctDeg1.0 Primary Assembly

    Range
    9359127..9359580 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004628215.2 → XP_004628272.1  40S ribosomal protein S15a

    See identical proteins and their annotated locations for XP_004628272.1

    UniProtKB/TrEMBL
    A0A6P3EYL3
    Related
    ENSODEP00000026020.1, ENSODET00000026444.1
    Conserved Domains (1) summary
    PTZ00158
    Location:1 → 130
    PTZ00158; 40S ribosomal protein S15A; Provisional
Nucleotide Protein
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