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SDC4 syndecan 4 [ Sorex araneus (European shrew) ]

Gene ID: 101555248, updated on 8-Mar-2024

Summary

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Gene symbol
SDC4
Gene description
syndecan 4
See related
EnsemblRapid:ENSSARG00000035098
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorex araneus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Soricidae; Soricinae; Sorex
Orthologs
human mouse all
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Genomic context

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See SDC4 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_04 current mSorAra2.pri (GCF_027595985.1) 5 NC_073306.1 (128355683..128377146, complement)
101 previous assembly SorAra2.0 (GCF_000181275.1) Unplaced Scaffold NW_004546077.1 (144926..164337)

Chromosome 5 - NC_073306.1Genomic Context describing neighboring genes Neighboring gene antileukoproteinase-like Neighboring gene matrilin 4 Neighboring gene recombination signal binding protein for immunoglobulin kappa J region like Neighboring gene SYS1 golgi trafficking protein Neighboring gene TP53 target 5 Neighboring gene dysbindin domain containing 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027595985.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSorAra2.pri

Genomic

  1. NC_073306.1 Reference mSorAra2.pri

    Range
    128355683..128377146 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004621829.2 → XP_004621886.1  syndecan-4

    Related
    ENSSARP00000031193.1, ENSSART00000036055.1
    Conserved Domains (1) summary
    pfam01034
    Location:140 → 197
    Syndecan; Syndecan domain
Nucleotide Protein
Heading Accession and Version

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