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CLEC7A C-type lectin domain containing 7A [ Sorex araneus (European shrew) ]

Gene ID: 101553655, updated on 8-Mar-2024

Summary

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Gene symbol
CLEC7A
Gene description
C-type lectin domain containing 7A
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorex araneus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Soricidae; Soricinae; Sorex
Orthologs
human mouse all
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Genomic context

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See CLEC7A in Genome Data Viewer
Location:
chromosome: 10
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_04 current mSorAra2.pri (GCF_027595985.1) 10 NC_073311.1 (50889584..50901671, complement)
101 previous assembly SorAra2.0 (GCF_000181275.1) Unplaced Scaffold NW_004546068.1 (311424..323434)

Chromosome 10 - NC_073311.1Genomic Context describing neighboring genes Neighboring gene C-type lectin domain family 1 member A Neighboring gene ATP-dependent RNA helicase DDX42 Neighboring gene small nucleolar RNA SNORA66 Neighboring gene oxidized low density lipoprotein receptor 1 Neighboring gene transmembrane protein 52B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables (1->3)-beta-D-glucan binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pattern recognition receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to molecule of fungal origin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in detection of fungus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in detection of molecule of fungal origin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phagocytosis, recognition IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell population proliferation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cytokine production involved in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of killing of cells of another organism IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of lymphocyte activation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of phagocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
C-type lectin domain family 7 member A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027595985.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSorAra2.pri

Genomic

  1. NC_073311.1 Reference mSorAra2.pri

    Range
    50889584..50901671 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004621745.2 → XP_004621802.2  C-type lectin domain family 7 member A

Nucleotide Protein
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