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SGCD sarcoglycan delta [ Sorex araneus (European shrew) ]

Gene ID: 101541263, updated on 8-Mar-2024

Summary

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Gene symbol
SGCD
Gene description
sarcoglycan delta
See related
EnsemblRapid:ENSSARG00000032428
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorex araneus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Soricidae; Soricinae; Sorex
Orthologs
human mouse all
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Genomic context

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See SGCD in Genome Data Viewer
Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_04 current mSorAra2.pri (GCF_027595985.1) 2 NC_073303.1 (249727031..249950061)
101 previous assembly SorAra2.0 (GCF_000181275.1) Unplaced Scaffold NW_004545903.1 (1657515..1742903)

Chromosome 2 - NC_073303.1Genomic Context describing neighboring genes Neighboring gene histamine receptor H2 Neighboring gene small nucleolar RNA SNORA66 Neighboring gene sideroflexin 1 Neighboring gene uncharacterized protein DDB_G0271670-like Neighboring gene U6 spliceosomal RNA Neighboring gene 60S ribosomal protein L39-like Neighboring gene T cell immunoglobulin and mucin domain containing 4 Neighboring gene hepatitis A virus cellular receptor 1 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027595985.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSorAra2.pri

Genomic

  1. NC_073303.1 Reference mSorAra2.pri

    Range
    249727031..249950061
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055126794.1 → XP_054982769.1  delta-sarcoglycan isoform X2

  2. XM_055126795.1 → XP_054982770.1  delta-sarcoglycan isoform X3

  3. XM_055126791.1 → XP_054982766.1  delta-sarcoglycan isoform X1

    Related
    ENSSARP00000019002.1, ENSSART00000044346.1

  4. XM_004611445.2 → XP_004611502.1  delta-sarcoglycan isoform X2

    Conserved Domains (1) summary
    pfam04790
    Location:27 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  5. XM_055126793.1 → XP_054982768.1  delta-sarcoglycan isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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