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ACOD1 aconitate decarboxylase 1 [ Ochotona princeps (American pika) ]

Gene ID: 101535418, updated on 8-Mar-2024

Summary

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Gene symbol
ACOD1
Gene description
aconitate decarboxylase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Ochotona princeps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Ochotonidae; Ochotona
Orthologs
human mouse all
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Genomic context

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See ACOD1 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_07 current mOchPri1.hap1 (GCF_030435755.1) 12 NC_080843.1 (24932172..24940909, complement)
102 previous assembly OchPri4.0 (GCF_014633375.1) 8 NC_050543.1 (48559059..48567187)

Chromosome 12 - NC_080843.1Genomic Context describing neighboring genes Neighboring gene F-box and leucine rich repeat protein 3 Neighboring gene uncharacterized LOC131481547 Neighboring gene CLN5 intracellular trafficking protein Neighboring gene potassium channel tetramerization domain containing 12 Neighboring gene uncharacterized LOC131481562

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cis-aconitate decarboxylase
Names
immune-responsive gene 1 protein homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030435755.1-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOchPri1.hap1

Genomic

  1. NC_080843.1 Reference mOchPri1.hap1

    Range
    24932172..24940909 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_058670613.1 → XP_058526596.1  cis-aconitate decarboxylase isoform X1

  2. XM_058670614.1 → XP_058526597.1  cis-aconitate decarboxylase isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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