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AGA aspartylglucosaminidase [ Ochotona princeps (American pika) ]

Gene ID: 101534442, updated on 8-Mar-2024

Summary

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Gene symbol
AGA
Gene description
aspartylglucosaminidase
Gene type
protein coding
RefSeq status
MODEL
Organism
Ochotona princeps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Ochotonidae; Ochotona
Orthologs
human mouse all
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Genomic context

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See AGA in Genome Data Viewer
Location:
chromosome: 11
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_07 current mOchPri1.hap1 (GCF_030435755.1) 11 NC_080842.1 (30201455..30214745)
102 previous assembly OchPri4.0 (GCF_014633375.1) 2A NC_050560.1 (44604076..44614753, complement)

Chromosome 11 - NC_080842.1Genomic Context describing neighboring genes Neighboring gene ornithine decarboxylase-like Neighboring gene U1 spliceosomal RNA Neighboring gene casein kinase I-like Neighboring gene nei like DNA glycosylase 3 Neighboring gene large ribosomal subunit protein uL6-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deglycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030435755.1-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOchPri1.hap1

Genomic

  1. NC_080842.1 Reference mOchPri1.hap1

    Range
    30201455..30214745
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004579026.3 → XP_004579083.1  N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase

    Conserved Domains (1) summary
    cd04513
    Location:29 → 332
    Glycosylasparaginase; Glycosylasparaginase and similar proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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