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PLOD3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 [ Ochotona princeps (American pika) ]

Gene ID: 101533570, updated on 8-Mar-2024

Summary

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Gene symbol
PLOD3
Gene description
procollagen-lysine,2-oxoglutarate 5-dioxygenase 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Ochotona princeps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Ochotonidae; Ochotona
Orthologs
human mouse all
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Genomic context

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See PLOD3 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2023_07 current mOchPri1.hap1 (GCF_030435755.1) 24 NC_080855.1 (26610694..26617209, complement)
102 previous assembly OchPri4.0 (GCF_014633375.1) 6 NC_050541.1 (25543692..25549955, complement)

Chromosome 24 - NC_080855.1Genomic Context describing neighboring genes Neighboring gene 2-acylglycerol O-acyltransferase 3-like Neighboring gene 2-acylglycerol O-acyltransferase 3-like Neighboring gene zinc finger HIT-type containing 1 Neighboring gene claudin 15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen glucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen-lysine 5-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-lysine hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030435755.1-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOchPri1.hap1

Genomic

  1. NC_080855.1 Reference mOchPri1.hap1

    Range
    26610694..26617209 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004586960.4 → XP_004587017.2  multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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